GgaINT0124034 @ galGal3
Intron Retention
Gene
ENSGALG00000001446 | GSN
Description
NA
Coordinates
chr17:9115192-9116840:+
Coord C1 exon
chr17:9115192-9115384
Coord A exon
chr17:9115385-9116638
Coord C2 exon
chr17:9116639-9116840
Length
1254 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
ATCCTCTGTCCTGCCCGTAGCCT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GAGCTGAGACTCCCTGCAGCTACTGCAGGAGGAGGGAGAAGCCCATTTGCTGTTAGAAATGGGAAAGCAGGGCTTTGGTTATATTTTTCTTACCATTTTTTGCACAATGGCTCTGAAGCTGAACTGTGTGAGCTCCGTGTCTGTTGCAGGGCTTGGCTATGTTGTTACAGCAGCTGTGGTGCTTTCAGCTGTG
Seq A exon
GTAAGTGACCAGCACCACAATGAAACATTGACAAACTTCTACTCTTCAATTACTTCTAAGAGTCACACTGTTCTCTAACTTTGTAAGGAGTTTGTGCACTTTTATAGTGGGATCTGGGGAGAAATGAAGTCCGGCTGACTGGAATCAGAACAGTCAAAACTCACTGCTTTCCATCTTTATCTGTTTGATGTCTGCTTAGGAATCACTTTGGTAGCTAACCTGCTGTTTTGCTCTCTAGTTTGTAACATTCTTTGTTTCTGCCTTGGAAGCTGAGCAGATGGTTCTCCTGTCCATCAGCTACTGTGAGCCCTTTTCTTTATCGAATTACTGGATGCTTCTAATGTAACATTTTAATTTTTTCTTCCCTTTGTCTGATATCACTTACAGGCATGCTGTAATATACAGACAGACTTCCTTTGCCAATACTGCAAAAATGTTCTGTTTACTTTCAGTTTTACCAAAGTGAATTATTTTCATACGTAGCTAAATGAAAGTGTTCATAATGTTTTTGTGAAATAATGGATTGTATGCTGTAAATAGATTGCATTTGTGTGACAGTGCATGTATTAAAGCAGAATCACAACGTCCCTAGGACAGGACTTTATGTATAGTACTTTAATGCCTAAAATAGGACAGTGGCACAGAGATATTGTAGTAATGTGTCTACTGATTATTAGTAGGAGAATATAAGAATATAAGGAACTTTTAAATGATCTCTTTGATATTCACAGTATCTTCCAGTGAGAGCAGGATCAGATTACACAATAATAATAATACTATCTGGATTAATATTACGCACAATGTAAATAATGATTAATAATTGTGCAAGCTGTACAACATATAGTTAAAAGTGATATGTCCATTTCCTGCAATAATTAGCAAGGAAACTTGTATTCCACTTATGGGCCATATTGATAAGCTATAAATTAGTTTGGAAAATATATAAAGTAAAATCAGGAAATTAGGGAAAAAAAACCAAACAAGCCCAAAACAACATTAGATAAAAGAGAGCCTGCAAAAGAATGTGCCAGGGAGAACGCAGAAAATAAAGTTGTTTGGAATTTAAAGGTAACAATCAAAACAACAAAAAAAAAGAATTTATTTATTTATTCACAAAATTCAATGCAGGAGAAAAGAAAGGAAACTCTCCACTTGTTGCCTGGGACAATAGTTAAAAGATCAGAAGCAATATCATTTCAACAAGAGTTTCCTTGTACTGTGTGTGTTGAATAACATCCTCTGTCCTGCCCGTAG
Seq C2 exon
CCTGTCAGCATGGTGGAGCACGCTGAGTTTTCGAAGGCTGGGAAGGAGCCTGGCCTCCAGATTTGGAGGATCGAGAAATTTGATTTGGTACCAGTGCCAAAAAATCTGTACGGAGACTTCTTCACAGGGGATTCCTATCTGGTGCTTAACACCATCAGGCAGCGGAGTGGGAACCTCCAGTACGACTTGCACTTCTGGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001446:ENSGALT00000038839:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=61.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGACTCCCTGCAGCTACT
R:
GCTGCCTGATGGTGTTAAGCA
Band lengths:
353-1607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]