RnoINT0068097 @ rn6
Intron Retention
Gene
ENSRNOG00000018991 | Gsn
Description
gelsolin [Source:RGD Symbol;Acc:1303089]
Coordinates
chr3:14482388-14484145:+
Coord C1 exon
chr3:14482388-14482535
Coord A exon
chr3:14482536-14483940
Coord C2 exon
chr3:14483941-14484145
Length
1405 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCTGTCCTGTCTCTCTGCAGCCC
3' ss Score
13.42
Exon sequences
Seq C1 exon
CACCGTCACCATGGCTCCGTATTGCTCCTCGCTGCGCTCTGCGCTGCTCGTCCTGGCGCTGTGCGCACTGTCGCCGTCCCATGCAGCCACCGCATCGCGGGGCAGGGCCCAAGAGAGGGCGCCCCAAAGTCGGGTGTCTGAGACGCGG
Seq A exon
GTGAGTGCCCGGGGTCCCCAGGGCTCCCCGAGTAATTGTCTATTGTAAGTTCTTGCAGATACAGCGCTAGGAAAAGGGGAGTAATTCAGGTGTAGGATGGAAAAACTCTTTTGTTGCTTTGTAAGTATGTCTTGCTGCTTCCGGGCTCCTGGGGGCGGGGGGGGGGGCGGGGGCAGGTCCCGGCTAAAACTGTTTCCCTCCCTGCAGGCTAACCTCACCTTGGCTGGATCTTTCCCCATTACTGATTCGGATCCCATCTCCCTTATCATGTCTAATTGCTGTCTCTACTGCCCTTCTTGCTGGTCCTTCTTAGTCAGACTCCTCTTCATTTGCTGTTTGTTGTGTCTGACCCTTCCCCATTCTTTTTTCCCTATGAAAGACTATGGACAGGACTGTTGTTTGACTCTCCTCTCTGACTGTTGTCCCCTACCCTCCCCGACCCCTCCCACTTTCCGTTCTCTCCTCTCCTCTCCCTGTCTTGAGTTTTTCTCCTCAACCGCATCTGACCTCTTCTGCCTGATTTTTGTTCCAACCAGACCATCCCCTGTCTGAGGTGACCTGCTGACTTCCCCCCTTAGGCATGCAAACCTAACCGGCTGTCCCATTGGCACACCCAGAGCATGTCTGGCAGCCTTTCCCACCTTCGACCTTTTCCTAACAGGTCCCCCCCCCCCCCCCGCAGACTTCAGGCTCCATCCCTTCCCCTTTTCCAAGACGTGGAAATTTGGTGGGTGGGATGGGGGGCGGGGCAGGAGGGAGGAGGCAGGCAGCGCAGGAGGCCACTTGGGCCCGCTAAGCCAATCCCTTTTTTGGGCTGTGATGGAAGGGGTCTGAAGTGACCCTTCCCCTTCCAAGGAACAAAACCAAACAGGACATGGGACCTAGGATCGGGCCCCATCCCTTTTGATCCTCGGTTTCCCCATTTGCAGAGTAGGAGCGGATATTGAGTTCTAAGCTGTGAAGGTGCTGGAAGAGAGCAGATAGAGTCCCTGGGGACCGGGAGATTTGTCACTGCCATCTGGGAGCGTCTATCCATAGATGCAGAGATTGCCTTTGGGGTCCAGGACCATCCCTCTATGTTGTTTCCCAACTGGGGAATCTCTGAAAGATGGCCTGCCTCTTTGTGCCTTAGCTGTCCCCCCAAAAAGGGAGAGCGCCCTCTGCCTCCTCCGTCACCTTGCCAAGCAGGAGAGCAGAAAGGGAGACAGCATGGCTTGGCCAGAGCTGAAGACTAGAATATGTGTTTTCCTAACTCCCAGAAAGGGGTTGATTCTCCTCTACCACAGGGAGAGCACGAGGCTCAAGTGAGTCACTCTTGGTGCTGGAACCTGCCCTCCCTCATGCCTGGGGTCTCTCCTTGCTGACACCTACACTTCTGCTCAGGTTCTGTCCTGTCTCTCTGCAG
Seq C2 exon
CCCAGCACCATGGTGGTGGAGCACCCCGAATTCCTGAAGGCAGGGAAGGAGCCTGGCCTGCAGATCTGGCGTGTGGAGAAGTTTGACCTGGTGCCTGTGCCCCCCAACCTCTATGGAGACTTCTTCACGGGTGACGCCTATGTCATCCTAAAGACGGTGCAGCTGAGGAATGGGAATCTGCAGTATGACCTCCACTATTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018991:ENSRNOT00000025857:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062617=Gelsolin=PU(50.0=60.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACCATGGCTCCGTATTG
R:
TAGTGGAGGTCATACTGCAGA
Band lengths:
342-1747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]