GgaINT0124152 @ galGal3
Intron Retention
Gene
ENSGALG00000005051 | FPGS
Description
NA
Coordinates
chr17:5521359-5521608:-
Coord C1 exon
chr17:5521506-5521608
Coord A exon
chr17:5521440-5521505
Coord C2 exon
chr17:5521359-5521439
Length
66 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CAACCGCCCGTCTCCCGCAGCCC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GGCGCCCGTGGTGTGCGGCGTCTCCTCGTTGGGCATCGACCACACCAGCATCCTGGGGGACACGGTGGAGAAGATCGCTTGGCAGAAGGGGGGCATTTTTAAG
Seq A exon
GTAGGAAGAAGGCCTGGCATCCCACCCTGACCCCGTGTTTGGATCCCAACCGCCCGTCTCCCGCAG
Seq C2 exon
CCCGGCGTGCCGGCGTTCACTGTGCCGCAGCCCGAACAACCGCTGGAAGTGCTCCGGGACCGAGCGCGGGAGTGTGGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005051:ENSGALT00000008101:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGCGTCTCCTCGTTG
R:
CTCGGTCCCGGAGCACTTC
Band lengths:
154-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]