RnoINT0062281 @ rn6
Intron Retention
Gene
ENSRNOG00000050780 | Fpgs
Description
folylpolyglutamate synthase [Source:RGD Symbol;Acc:1587713]
Coordinates
chr3:11722788-11723175:-
Coord C1 exon
chr3:11723073-11723175
Coord A exon
chr3:11722866-11723072
Coord C2 exon
chr3:11722788-11722865
Length
207 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTCCCTGGTGTGCCTGCAGCCT
3' ss Score
8.67
Exon sequences
Seq C1 exon
AAAGCCAGTGGTGTGTGGAGTCTCCTCTCTTGGCATTGACCACACCAGTCTGCTAGGAGATACAGTGGAGAAAATAGCATGGCAGAAAGGGGGCATCTTTAAG
Seq A exon
GTAACATAGCAGGCCAAGGCAGGAGAGGGTCATGGAGCCCAGGGTCTGTCCTTTTAACACTTAGGAAAGAATGGCTGTGGCACATCAGAACCAGGCCCTAGCCACATGCACAGTCTGGCTTCTTATCCTTCTCCCTGTGTGACCTGAACCCCTCTGTGGCCTCAGTTGAAATCAGCCCCTGTCACTTTCTCCCTGGTGTGCCTGCAG
Seq C2 exon
CCTGGTGTCCCTGCCTTCACTGTGCTACAGCCAGAAGGTCCCCTGGCCGTGCTGAGGGATAGAGCCCAGCAGATCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050780:ENSRNOT00000070916:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCAGTGGTGTGTGGAGT
R:
TGAGATCTGCTGGGCTCTATCC
Band lengths:
181-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]