GgaINT0124184 @ galGal3
Intron Retention
Gene
ENSGALG00000003941 | FUBP3
Description
NA
Coordinates
chr17:6512446-6513010:+
Coord C1 exon
chr17:6512446-6512496
Coord A exon
chr17:6512497-6512976
Coord C2 exon
chr17:6512977-6513010
Length
480 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGT
5' ss Score
6.97
3' ss Seq
TTTTTCTCTCTCTGCCACAGTAG
3' ss Score
8.73
Exon sequences
Seq C1 exon
GTCTCCGTGTAAGTGGGCTCCATGGAGCACAGATAAGAGATACAGAGAGAA
Seq A exon
GTATGTGCGAGCAATCTTCAATGCTTTTTGCCTAGACTAAATCTCCGAATCTGCTCAGCTTTTGTGTTTGTTCGTAGTACACACTGATCACTTGACGTGTCTTTTCTCCCCCTGCAGTCCCACCTCTCCCCGTTTCTCTTTTTTTCACTCTGGGTTTAAATCAGGAAGGAGGGAGGTGAGCTGCGGGGATTTGGATTTGGGCAGGCAGGATTTTCTCCCATGACTCTCAGCATGGGGAGACGCAGATCAATTCCCTATCCTGTGTTCAGCTGGCCACTGGGTTATGGTGTGTGCTGATCAAGAAATCCCCTCCTGTTTTGTACCCCATAACGCATTCATTTCAGCTGCTGAACCTAAATTACTGTTTTGCTTTTCTTTCTTTTTTGATGAAATGGTAAGAACTCTTTTTCTATAGGGATGAAGTTAGTTTATCCGTGCTAATGCTTTGATTTTTTTTCCTTTTTTCTCTCTCTGCCACAG
Seq C2 exon
TAGGTAACCAGTTAGGGGCCCTGGTACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941:ENSGALT00000039554:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]