GgaINT0124201 @ galGal3
Intron Retention
Gene
ENSGALG00000003941 | FUBP3
Description
NA
Coordinates
chr17:6541886-6542083:+
Coord C1 exon
chr17:6541886-6541922
Coord A exon
chr17:6541923-6542077
Coord C2 exon
chr17:6542078-6542083
Length
155 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTACCATTGTATTATCTCAGCAT
3' ss Score
4.73
Exon sequences
Seq C1 exon
CGGGCAGACACTAGGGCAGGCGCAGGCCCACAGCCAG
Seq A exon
GTGTGTATTCACCCTCTGCTGTTCCCCTGGGGGAGCTGGGAGTGCTGGCCTTGCCCGGGTGTGGGGAGAGCTTCGGAGTCATGCAGTGAAGCACAGAGATGTTTTGTGGCTGAAGAAGTCAGAAGTTGCTCAGTGCTACCATTGTATTATCTCAG
Seq C2 exon
CATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941:ENSGALT00000039554:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.769 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]