MmuINT1010582 @ mm10
Intron Retention
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31615498-31617526:+
Coord C1 exon
chr2:31615498-31615625
Coord A exon
chr2:31615626-31616178
Coord C2 exon
chr2:31616179-31617526
Length
553 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
CCCTCTCCCTCCCCCCACAGGAG
3' ss Score
13.73
Exon sequences
Seq C1 exon
GTCATCCCACCAGTGCTGCCCCACAGGCCAGCTCCCCCCCAGACTACACGATGGCCTGGGCTGAGTACTACAGGCAGCAGGCCGCCTTCTATGGGCAGACTTTAGGGCAGGCTCAGGCCCACAGCCAG
Seq A exon
GTCTGTAGCCAGTCCCCAGCGCCATGATGCCACGCAGCCTTTGTGCTTGCCTAGCCCCAGGGTGAGCACAGTGGCCTGTGGGGGTCTCCTCTGTCCCTCCACTCCATAACTGAGCTTGAGCAGAGGCTGCTTCTAGCTCTGGGCCTAGAAACCCTGACTATACCTAAGTGCCCTGGGTCTGCAGTGAGCCAGGACCACTCCAGCAGTAGTTCTTGCAGAGAGTGGCCAGGTTGGGCCTTTACCTGCACAGCACCTTTGGGGCCAAGCAAGTGGAGGGCCAGCTTGGCCTCTTTCTGTGTAGAAATGAGGAGGGCTCTCTCCCGTTCTCAGCCAAGAAGGAGCTCTCTTTCCTTGGACCTTGGGGGCAAGGCTCCCTCCCAGGGGGTACCTTTTGCCTTGTAGGAAGCTGGGGTTAGACCTGGTGACCCAGGAGAAGCCTTCCCCTTTCACCCCATACCCCCACATTCTGACCCTAGAACCTGAGGTGCTTAGCATTCAGTACCTGGTGGTATGAGACTCTGGTCTTGGGCTGACCCTCTCCCTCCCCCCACAG
Seq C2 exon
GAGCAGTAGATGGGCATCTGCCGCGGCTCTTCCCCGAAATCAGTGTGAGAGAAACCTGTTTGTTACAGAGATTTTTAGATTTGCAAACCTTTTGATGAAGACCTTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACAGAAATTTTCTAAAAATTGGGAAAATTAGTTACTAAACATTGCTGGTAATTTTTACGTCATGATTTCTTTGTAAATGTGTGAGCTCCGGGGCTCTTGGAGCGAAACCTGCAAGCTCGGGTGCCCAAGCTCTCCTCGGAGCCTGGCATTTCATCACACGATGGCTTTGTCTTGTGTCTTTTTAGTTACAGTTTGGGGTGGGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGGTTTTTGGTTTTGGTTTTTGTTTTCCCTTTTTTTTTTTTTTTTTTCTGTTACAACAGAAAAAATGGCTTGGAAGTCTTAGGTGGTAATGTAACAAATTCTTTAAAAATTTTTGAAGCAGTATTTAAATATTCGTAAATGTAAATTCATTGTGTTTCACCTCTAATTTCTTGTATCTTGGCTGTCTGGTTTTATTGCATTTTTTAAAAAAAACTGAACTATTATGTATTGTAATTAATGATGTGAATTTTGAACTGAGACGGGTCCTTGTGTTGCGGGAGGGTCATTTGTGGGTTATGTCATTTCTAGCGTTTTGATGGTGATGCAGAGACGCGGTCTGCCTTCGTGTAAGCTGCTCGTCTCCATTATCCAGGGCAGTTGTGTGTCTAAGACCTCCAAGCTGGTTTTAAAAACAAAAAGCCTTTCTCTATTCTCAGAAATATAAATACTGTTATTTTTAATATTAAAAAGAAATTCAATATAACTTTTAACAAACACTGTGGACATTAAACCATATAAAAAAATGTAGTAACTATTTTTTAATTCCAGGGTGTTTTTGCTTTTTTTCCTTAAATATTTTCTTAATATTTGTCAAATTAACTAGATAAATAAATAAATCTAGTATTAACAACAGTATGAGTTAAATAATTTTGATTTAATAAAAGGGATACTATGATTTCCAATGTTTACTGTAGTGTATCTGTACAGATAACATGTATTTTTAAAGGAAACACGGAGTTGAAGCTATTTTTTCCTGCATTTTGGATTGACCTGAGGAACATTCCGTTTGAAACGTGCTCGTTACGGTTTGCCGTTCTTGTTTTCCTTATGATGCTTGAAATGTCTAACTATTAAAAAGGCATTGGAAATGTTATGCATGTTGTTTTTTAAAGATGTTCTTTTTATTTGACTGACAATTCATTTTACACTCTATATAATAAAATTTCCACAAGATGTCTTGTGGGCAAAGTGTTCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843:ENSMUST00000113482:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.616 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(23.3=13.5),PF090055=DUF1897=WD(100=63.5)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGACTACACGATGGCCT
R:
TTGCAGGTTTCGCTCCAAGAG
Band lengths:
343-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types