HsaINT0066558 @ hg38
Intron Retention
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130635999-130638352:+
Coord C1 exon
chr9:130635999-130636126
Coord A exon
chr9:130636127-130637013
Coord C2 exon
chr9:130637014-130638352
Length
887 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
CTCTTCCCTTCCGCCCACAGGAG
3' ss Score
12.52
Exon sequences
Seq C1 exon
GTCACGCCGCCAGCGCTGCTCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGGCAGAATATTACAGACAGCAGGTCGCTTTCTACGGACAGACGTTAGGGCAGGCGCAGGCCCACAGCCAG
Seq A exon
GTCTGTAGCTGATCACCAGCACCGCTGCCACTCCCTAGCCCCGAGCCCCTGCTCCCAAGCCTTCTGTGTTTCCTGACCCCAGGATGAGAGCGCTGGGCTAGGAGGAACCTCTGGGCGCCATAGCTCCTCAGCGAGGCTGCTTCTGCTGAGAGCCCGGCTCCAGCCCCTCTGTCCCTCCTCGCTCTGGAGAAAAAGAGTTTAGGCCAAGTGGGAGGATTGGGGGCGCAGCCCCTACAAGGAAGTGCCTGAACTTTCCTCAAGTCCAGGCCCCAGACCTCAGGGCTGATTAGTAGTCTCTCTCTTCCTCTAAGCCTCAGTTTCCCTAACCGTAAAGGAGCAAGTGCAGAGGGTGCGCTCCGGCGACTGCTCTCGAGGAGGGTGGAGTGGCCAGGCCGTCAGCCATGCCCGGGCAGCAGCAGGAAGCAGTGAGAGGGCAGGGGGGCAGAGCCCAGCTTTCCTCTCCTGTGCACAACCTAGAGGGTTCTGTTCAGAGGCCAAAAACGGATTTCTTATTAAAGAAGGGAAGACGTCCAAATGTTCCCACAGGGCGCATTTCCCACCTGATGCCAGTCAGGTCCTCATGGATAACATTTCAGTTACCTCCTGGCCCTGGACTCAGCTGGTTGGGCCTCTCACTGCCAAATTGGCCGTCTGGGTCTGGTCCTGGGGAAACAGGTGTCAGGGCTGGTGGTGATGGAGGAGAAGCGTGGCTCCCACTGTCCGCTCTTCCCTGCCCCAAGTCCCTAGTGGAGAGAGAAGCCCAAGACCTCTTCAGCAGAGGTTTTGTCTGGCCCAGCTCCCGTGACGCGAGACCTGGGGGAGGTCACTGGCACACAGACCTGAGAACCTGCCATCACAGACTAATTCCTCTTCCCTTCCGCCCACAG
Seq C2 exon
GAGCAGTAGGACAGCGTCCTCGTGGCCAACTCTCCCCTCAAAATCATTGTCAAAGAAAACCTATTTGTAACAGAGGTTTTTACATTTGCAAACCTTTTGATGAAGAACTGTTGTTTTGTTCTGTGAAACACTATATTTAGATTAACGGAATTTTTCTAAAAATCAGGAAAATTAGTTACTAAAAATTGCTGATCATTTTTGTTTCATTATTTTTGTTATTTCAAATGTATAAGCTCTGGGATTCTTTTTGGAGCAATACCTACAAAGTCAGGCACCAGAATGTGCCTCAGAGCTGTGACATTTCAACATGATGGTTTTGGTTTGGTTTGGTTTTGTGTCCTTTTTATTTGCAGTTTTTTCTGTTGCAACAGAAAGTGGCTTGGAAGTCTTAGGTGGTATGTAACAAATTCTTTTTAAAAATTTTAAAGCAGTATTTAAGTATTCTTAAATGTGTAAATTCATTTAATGTTTTACTTCTAATTTCTTGTATCTTGGCTGTCTGGTTTTATTGCATTTTTAAAAAAACTGAACTATTATGTATTGTAATGAATGATGTGAATTCTGAACTGAGACAGATAATTGTATTGCTGTCCAACAGGGGTTGGGAGGGGCATTTTGTAGGGTTTGTATAATTTCTAGAGTTCGAAAGGGGTAATATAAAAATGTGCTCGTGTGTTTAGCCTACGTTTTTCTCATGCCTCCATTACCAGTTGCAATTGTGTATCTAAGACCTCCAAGCTTGTTTTTAAAACAAAACAAAAAACCTTTCTCTATTATCTCAGAAATATAAATACTGTTATTTTTAATATTAAGAAATTCAATATAACTTTTAACACACACTGTGGAACATTAAACCGTATAAAAATGTAGTTATAACTATTTTTAATTCCAAGGTGTTGTTTGCTTTTTTCTTTTAAATATTTTCTTAATATTTTGTCAGATTAACTAGATGAATAAATAAATCTAGTATTAACCGCATTATGAATTAAATAATTTTGATTTAATGAAAGGGATAATATGATTTCCAGTGTTTACTGTAGTGTATCTTGTACAGATAACATGTATTTTTAAAGGAAAAAAAACGGAATTGAAGCTATTTTTTCTTGCATTTCTAATTGACCTGAGGGACATTCCGTTTGAAATGTACTGAAGTTACAGTTTCTGGTTTTTTCTCCTTATTTTTCTTATAATGCTTGAAATGTCTAACTATTAAAAAAGACAATTGGAAAATGTTATGCATGGGGTTTTTAAGAAAACAAAGTGTTCTTTTTATTTGACTGACAATTCATTTTACACTCTATATAATAAAATCTCCACAAGGCATCTTGTGGGCAAAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164:ENST00000319725:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGCTTTCTACGGACAGACG
R:
CAGCTCTGAGGCACATTCTGG
Band lengths:
343-1230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development