GgaINT0124228 @ galGal3
Intron Retention
Gene
ENSGALG00000000927 | ANGPTL2
Description
NA
Coordinates
chr17:11032717-11033360:-
Coord C1 exon
chr17:11033167-11033360
Coord A exon
chr17:11032988-11033166
Coord C2 exon
chr17:11032717-11032987
Length
179 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
3' ss Seq
TTCTCTTGCTTCCTTTATAGCAA
3' ss Score
9.59
Exon sequences
Seq C1 exon
GACCCTGGAGAGATTGTCTACAAGCATTAGAAGATGGCCATGACACAAGCTCCATCTATCTTGTAAAACCAGAAAACACAAATCGACTTATGCAAGTCTGGTGTGATCAGCGGCACGACCCCGGTGGCTGGACAGTCATTCAAAGACGGCTGGATGGTTCTGTCAACTTTTTCAGAAACTGGGAGACATACAAG
Seq A exon
GTTAGGACAAGTGAGCAGTTTAATATCTTCTACCCTCTACTGGTAAAGTAATTTAAAAGATGGATTTAGAGTCTGGTCAACAGCTTACTTTAAAAAGGAGCTTGCTATCTACTTAAGAATACATTCAGATTCAATAAAGCAGGCACAGTACTAACATGCTTCTCTTGCTTCCTTTATAG
Seq C2 exon
CAAGGATTTGGTAATATAGATGGAGAATATTGGCTCGGATTAGAAAATATTTATTGGTTAACAAATCAAGGCAACTACAAACTGCTCATAACAATGGAAGACTGGTCAGGTCGAAAAGTATTTGCTGAGTATGCTAGCTTCAGACTGGAGCCAGAAAGTGAGTATTACAAGCTGAGACTGGGACGCTACAACGGCAATGCAGGAGACTCCTTCACTTGGCACAATGGTAAACAGTTCACCACATTGGACCGGGACCACGATGTATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000927:ENSGALT00000001362:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(29.3=96.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(41.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCTGGTGTGATCAGCGG
R:
TTCTGGCTCCAGTCTGAAGCT
Band lengths:
258-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]