HsaINT0007998 @ hg38
Intron Retention
Gene
ENSG00000136859 | ANGPTL2
Description
angiopoietin like 2 [Source:HGNC Symbol;Acc:HGNC:490]
Coordinates
chr9:127091670-127093926:-
Coord C1 exon
chr9:127093733-127093926
Coord A exon
chr9:127091941-127093732
Coord C2 exon
chr9:127091670-127091940
Length
1792 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTCTCCTGGGTTTTCCCCAGCAA
3' ss Score
7.2
Exon sequences
Seq C1 exon
GCCCATGGAGAGACTGCCTGCAGGCCCTGGAGGATGGCCACGACACCAGCTCCATCTACCTGGTGAAGCCGGAGAACACCAACCGCCTCATGCAGGTGTGGTGCGACCAGAGACACGACCCCGGGGGCTGGACCGTCATCCAGAGACGCCTGGATGGCTCTGTTAACTTCTTCAGGAACTGGGAGACGTACAAG
Seq A exon
GTGAGACTCGGCAGGGGATGTCTGTGCTGCCCACAAGGTGACTGGCCCACCCCAAGAGAGGCCTGAGCAACCAATAGAAGAGCCCACTCAGAGGTACATGCTGACCAAGCCCAGGCCTGTGCGGCCCCAACAACACATATACCTGAGGCGAGAAGGATGCAGACAGGGCCATTTTGCAAACCCACCAGGGGTAGTGAGGACCAGCGCCTCCTCTGCCTGCTGCTAGAAACTGCTGCAGGACAAGAGTCAGTAGACCAGACCACCACAGCCCCACAGGACAGGGTGAGAGTTTAGAAACGCTGGTATGGGGGCCCAGGGGTGAGGAGCATTTCACTCCCAAGTGGGGTTTCCATGGGGAAAGACCCGCTCTCAAAGCCCAGAAGGCGCAAGTCCCAAGAGGCTCCCAGTTCCTGGGAGAATCCCCCAAAAAGTCCTGGTAGGGAGTTGTGGCAATGCTCAAGTCCTAATTCCAGGCTCATCCTCTGGGCTCCCTGGTTCCCAGGGAGTTGAAATGCTCATCTGTGTAGCAGGGAAAGTTGCCAGGACTCAGTCATACATCGTTCTTCCCCCTCTAAACAGAGGTAGTACTAAGGAAGGCAAGAGTGGCTCTGTTTGCTGAGTGCCCAACCCGTGCCAGCACCATGCTAAGGGCTTTCGTGCATTATTTTGTTTAATCTCGTATCAACCTCCTGAGGGAGGTTCTGTTATGGACCCAGCTTACAGATGAAAGTGTGGAGTAATTTGCTCAGGGTTGCAAAGCCAGGAATTGGCCCAGTAGTGACTGCAGCTGAGGCCTCTGACACTGAAGCTCACAAACTACCTGAAGCCATGATGCCTTGCACACATGGCTCTGCCATGCCCCTTCTTGAGTCTCCTGTCCTGGTTGTCCCCCACCCCACCTCCTGAACAGCCTGTGTCTCTGCTTTTTTCTCCTCTTCCACCTACATTAGGAGCGGGAGACTCCTCCTTTCTTAGAGGCAATACAGTGCAATGATTAAGACTGGGTTCTTGGTTCAAATCCTGGTTCACCCTCAGGCATTCTGAGACCCTGAGCCTCTCTGGGCCTCAGTTCATCCATACTAGGGAGGATAATGATAGCACTTAGTTCTTCGAGTTGACATGAGGATTAGTAAAACAACCTATGTAAAGTTCTTAAAACAGTGCCAGCACATCACAAGCGCTCAATACTAAATAATTATTGTATTAATGAATCACCGATTCCCAAGACTTTAGTGGCCGTAACTCAGCTGCTGACCCCAAAACCACATGCAAAAAAAAACAATAACCACAAAACCACTGGGTTTTAGACCTAGAGGGGAGCGCCGGTGGATGGGACACATGCGTCACAGCTCACACCCGTCTGGTGCGTTACAGCTTACACGTGACCCTCACACACAGCTCATCTCCAGAGAAGGAGGTGAAGCTCAGTGAAGGTCAGAGATTTGTCTGAGGAATGCCTGCTGCGTGCCTACTTAGTGCCAGGCCCTCCACCTGCCACAGCACACGTGTTCCTGCAGCAAGCCTGTGGGGAAGGTAATATAGCCTCCCTGATGTAAGAACAAGGAATCTGGGGTTCACATGATGCCTGGCACAGGGTAGGCACTCTACATATTTTTGAATAATGTGTGAGTCATGGAGAGATTAAGAGGTGGAGTAGGGGTCTGAACCAGGTCTGCTTCATGCTCTGCTTGTTTCCCAGGCCCCTCTATCCAGGGCTGAGTGTCTGACAGCCAAGCCTGCTGGCTGCAGGTGCTGCAGGCTCCACATTAACACTCTCCTGGGTTTTCCCCAG
Seq C2 exon
CAAGGGTTTGGGAACATTGACGGCGAATACTGGCTGGGCCTGGAGAACATTTACTGGCTGACGAACCAAGGCAACTACAAACTCCTGGTGACCATGGAGGACTGGTCCGGCCGCAAAGTCTTTGCAGAATACGCCAGTTTCCGCCTGGAACCTGAGAGCGAGTATTATAAGCTGCGGCTGGGGCGCTACCATGGCAATGCGGGTGACTCCTTTACATGGCACAACGGCAAGCAGTTCACCACCCTGGACAGAGATCATGATGTCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136859:ENST00000373425:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(18.3=97.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(48.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTACCTGGTGAAGCCGGAG
R:
TAAAGGAGTCACCCGCATTGC
Band lengths:
355-2147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development