RnoINT0017316 @ rn6
Intron Retention
Gene
ENSRNOG00000016678 | Angptl2
Description
angiopoietin-like 2 [Source:RGD Symbol;Acc:620004]
Coordinates
chr3:12288415-12290141:+
Coord C1 exon
chr3:12288415-12288608
Coord A exon
chr3:12288609-12289870
Coord C2 exon
chr3:12289871-12290141
Length
1262 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CTCTCCTGGGTCTTCCCCAGCAA
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTCCATGGAGAGATTGTCTACAGGCCCTAGAGGATGGTCACAGCACCAGCTCCATCTACCTGGTGAAGCCGGAGAATACCAACCGCCTTATGCAGGTGTGGTGCGACCAGAGACATGACCCTGGGGGTTGGACTGTCATCCAGAGACGCCTGGATGGCTCTGTCAACTTCTTCAGGAACTGGGAGACCTATAAG
Seq A exon
GTGAGATTAGTGGGCCTATATGCATTGCCAGCAAGGTGATTAGACAGGACAAGGACAGGACTATTTCTGCAAAGCCACCTGAGTGATAAGACCAGGCCCCTCCTTGTCTGCTGTTCAGGAGAGGATGGAGTAGACAGCAGCTTACTCCCAGCCGGGGCCTCTATAAGGTGGCTCTGCTCTTGAGGTCAGAAGGGGAAGGGGCCAAGGCTCCAGGGCCTGGAAAGCTCCCTAGAAGCCATGTGTAGGGAACTCTGACAGTAAGTGGGCCCTAACAATAAGGTCTATTCTCTGGGCTTTCCAGTGTCCAGGACATTGAGCTTCTCCTTGTAAGTCAAGTACAAGGGATCCACCACACCTCCCACCCAAGAAGGGACAGTAAGGATGACATGAGCAGCTCAGGTCAATGGAAACATACCCTGTGTCAGGTGCTGTAACAGTGGTCTTGTATATGCCTTGAGGGAGGTACTGCTATGAAGTCACCTTACAGGTGAGAAGGGAAAGCATCCTGCACATGGCTTACAGCCACAGCACGGTAAAGCAGCAACTGCAGCTGAGGGCTCCCCTCAGCCCTGATGCCTCTGTGTGGAGTCCATCCTGGCTTGCCCTGGGCACCTGTATATCTCCTGCTTGTCTCTCCTCCAAAGCCTAGCCTTGAGGTCCTCCTTGCACTCCTCCATTCTCTCAAGGAGATGGTACCACACAGCAAGTGCCCATGCATCCTGTGGAGGCTGATAGTATCTAGCTCTGAAAATCACTTAAAAGACCTGGGGCCACTTCTCAGCTGATGCCCCAAAGCACACATCAAATGAATAACAAAATTACTGCGTTTCAAACCTAGAAGGGCCCAGGTGGACGCCATATGCCTATCACAACTCTTAGCTGTGGTAGTCTATGCTAGAGATTGCATATAACCCACACATATAACCCATTTCCAGAGAAGGCAACTGAGGCATGGGGAAGGCAACGGCTCTTGTCTAAGCAATGGCTGCATGCCTTCTGGGTGCCAGGCTCTCAAGTGACCACATCTTCCTGCCTTTGAGAAGTTACAGAATCCCCAGGCAAGGACAAGAAGCAGGCTCACATGATAGCAGAGAAAAGGTGTGCTCGTGAGATACACGTGACTGACAGTTACAAAAGTTCAGTAAGTCACCCAGACAGAGCCTCATACACAGGTAGCAGGGACTGGAGCCCAGGCCTGCCTTATGCTCCGACTATTTCTGGGACACAGACTCCTCACTCACGCTCTCCTGGGTCTTCCCCAG
Seq C2 exon
CAAGGGTTTGGGAACATCGACGGCGAATACTGGCTGGGCCTGGAGAACATCTACTGGCTGACGAACCAAGGCAACTACAAATTGCTTGTAACCATGGAGGACTGGTCTGGCCGGAAGGTCTTTGCAGAGTATGCTAGCTTCCGACTGGAGCCAGAAAGCGAGTACTATAAGCTGCGGCTGGGGCGTTATCACGGCAACGCAGGCGACTCCTTTACCTGGCACAACGGCAAACAGTTCACCACCCTGGACAGGGACCATGATGTCTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016678:ENSRNOT00000022585:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(29.3=96.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(41.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCGGAGAATACCAACCG
R:
CCGTTGTGCCAGGTAAAGGAG
Band lengths:
357-1619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]