GgaINT0124229 @ galGal3
Intron Retention
Gene
ENSGALG00000000927 | ANGPTL2
Description
NA
Coordinates
chr17:11031626-11032987:-
Coord C1 exon
chr17:11032717-11032987
Coord A exon
chr17:11032295-11032716
Coord C2 exon
chr17:11031626-11032294
Length
422 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
AATTGAGCTCTCTTTTACAGGTA
3' ss Score
8.77
Exon sequences
Seq C1 exon
CAAGGATTTGGTAATATAGATGGAGAATATTGGCTCGGATTAGAAAATATTTATTGGTTAACAAATCAAGGCAACTACAAACTGCTCATAACAATGGAAGACTGGTCAGGTCGAAAAGTATTTGCTGAGTATGCTAGCTTCAGACTGGAGCCAGAAAGTGAGTATTACAAGCTGAGACTGGGACGCTACAACGGCAATGCAGGAGACTCCTTCACTTGGCACAATGGTAAACAGTTCACCACATTGGACCGGGACCACGATGTATACACAG
Seq A exon
GTAATAAGGTCCCTTTTGGTCTCTTGCATAATAAATTGTGGCTGTACACAAAAGATAAAACTTATTCTCATTTTAAGAGTTGTCAATTATTAACTTATGAAGCAAAAACTGACAAACTGATGTGTCAACCAACTCTTATACGTACTGAATTAAAAATTCTCACAGAAATATTATTTACATTAAACAAAGGTCTGTAAAACGTACCATGAGGGTTATTTGAGACAATAATGCAACAGATTTTCCAGCAAAGAAGAGAGTCTGTCTACAGAACATGGCTCTTGAAGAAGGCTCAGTTCACCTTGCACATGCTTCACAGATTACATGTTAATAAATACATACTTAAAAAATGCACTTTGTGTTGAGCTTTTTTGCTTGCTATAAGATCTTTGTTTCTAAGACTGAAATTGAGCTCTCTTTTACAG
Seq C2 exon
GTAATTGTGCTCATTATCAAAAAGGAGGATGGTGGTACAACGCATGTGCTCATTCAAATCTCAATGGAGTTTGGTATCGTGGTGGACACTACCGCAGTCGATATCAGGATGGCGTTTACTGGGCTGAATTCCGGGGGGGATCATACTCGCTAAAGAAAGTTGTTATGATGATAAGACCTAACCCCAACACATTCCACTGAAATAATTTTTCTCTTGGCTAGCTTTCTTGTTCTGTTTTAAAAAACATGTAAAGCTATACTTTTATTGCCTGGAGTTATCTTTTCAAAAATAAGAAATGTAAGATATTGTACATTTATTGCTAAGATGTGAGGGCTTGTATATTGTGTTTCCAAGAATCATTCCAGGAAAATAAAAGCTGAAGAAAAAAGAAATGACAAATTTAGAACACCTCTTTATACTGAAAGCTGTTATATTAAGCCTTTTAGAATTGACATGTGAGATGGACTGTAGATAGATTTTCTGTTTTTCATTCCCTGTAAATTAAACTTGGATGCTAAAAATACTGCCACGTCATTTAAATATTTTTGAATGTTATATTATGTATAAATATTCTCAATTTACAAACTGTACAGCAAGAGTGTTATTATTATTATGAGCAATTACTTGACACAGGAGATCATATCCTTTGAACTATGTAGCTGGTATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000927:ENSGALT00000001362:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(41.9=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(27.9=89.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTAGCTTCAGACTGGAGC
R:
TTCAGTGGAATGTGTTGGGGT
Band lengths:
342-764
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]