MmuINT0015023 @ mm10
Intron Retention
Gene
ENSMUSG00000004105 | Angptl2
Description
angiopoietin-like 2 [Source:MGI Symbol;Acc:MGI:1347002]
Coordinates
chr2:33243679-33247717:+
Coord C1 exon
chr2:33243679-33243949
Coord A exon
chr2:33243950-33246086
Coord C2 exon
chr2:33246087-33247717
Length
2137 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACACCATTCTCTCCCTACAGGAA
3' ss Score
12.86
Exon sequences
Seq C1 exon
CAAGGGTTTGGGAACATCGATGGTGAGTACTGGCTGGGCCTGGAGAACATCTACTGGCTGACGAACCAAGGCAACTACAAACTGCTGGTAACCATGGAGGACTGGTCTGGCCGTAAAGTCTTTGCTGAGTATGCCAGTTTCCGACTGGAGCCAGAAAGCGAGTACTATAAGCTGCGGCTGGGGCGTTATCATGGCAATGCAGGCGACTCCTTTACCTGGCACAACGGCAAACAGTTTACCACCCTGGACAGGGACCATGATGTCTACACAG
Seq A exon
GTAGGAAACAAAGAACCAAACCTAGATGCTGAACAGGGATGAGAGATCCACCAACATTAGAGGCCCTGACCCCAAGGCCTGGAGCAAGAGGATGCCATTGTGTCAGGCAGCTTTACCAAGTCCTTCCTTCTGCCTACTGCCTTCAGACAATGACACTTACAAAAGCGGAAGCAGGGGTGCACAGATCTCAGATGAGGGCTGCCCTGGGCTAAGGCATGCATGCTTCAGGCTTCTCAGTTCTGAGAACACATGTTCACAGCCCACAGAGTCTGTGTCATGCATTCCACACTCCAAGGCTGCCCCCACCTCCTCAGCCATGCATCCACAGCATGCTGCATACTCTTGAATCCGGAAGTAAGGACAATGCCTCCTAGAAGGTCAGGGAACCTTACAAGAGCATCTGCCTCAGTGTGAGATTAGGACGCAGCATGCAGTAAGAATCTGCATGGGACTCTCTTACTGGGTACCTGTAATGTGAATGCAGTACTGTAAGAAAGCCACTAAGAGAAGCCAGGTAGTGGAGAAGTCATCTGTCCCTATTAGATCCTCAAAACCGGGTCTAGATTAAGCAAGAAACAAAGAAGAATCCAGAAAAATCCAAGATACACAAGTAGCTCAGCCCTAAGTATAAACACCCACAAGCATGTCCTCCATCCCAAGGCATGGTTTTGAAGTCTATCACTCAGGAACATTTCATGAGGCCCAGAGGCACTGTAGGTTGGCTAATTAGCAAGGTCCAGGGCTCCAGAGGCTGACACTACCTCTAGACTGAGTCTTTGTTTCTTAGGCAGGCCTAGCCCATCCTGCCTAGCCACCCACTATGTTCTGGTCTGAAAGAGGACCTTGTCCCTTTGAGGAGTGAGCTCTGGAGGCTATCTCAGAAATTTGCTTGTGCTTCAAGTAATTCCTGATATTAAGTCAGAGGAAACTCATCCCAGGTCCCTAAGACACACTCTAGTGGATAGTTTGCATAACTTCCAGGGTCGGGTGGAATAGGACCTACCACAGAGATCTAGCTGTCCATTTTGTCACTGATCTAACTCTGCTGTAAGGGCCACAGAAAAGCAGCCATTGCTCTGTAGTGTATGTGTAGGTGGGGGCAGGGGGCGGTCCTCTGAGCCAAAATTAGAAAAGCTTTCAGAAAAGGCAGAAGGATGGCCTTCGTGTGCCTGATGCTGGACCGTGGCGCTACAGCACGTCCTTGAAAGCTAGCATAGGGTAAGGAAACTGTCAGATGGGGTTCAATAGTACACAGGGCTGGGGCCAGGGTGTGGATAGGGAGACTGCTGGGGGCTCTCCCTGTCTGCCATTTGGTTCTAGTGTTAGGACATGGCTTAGCAGGAGCCCCAAGAAAATCTCTGGGAAATATGGGATGGCCGGGGTTAAGGCCTGGGCGTCCTGCTGCCTGCAACCTCCTTGCCCCCTCCTCCCATGACTTCTATGGAGACAGCTCCCCCTTGAGGAAGGGGTGCCTCTTAGGACCAGACCCCAGCTAAGTCCAGGTGACTGGGCTCTTGTCCTCCCTCTGTGGGACACCATGCCCCAGCATGCCTGCCATGCCCCAGCATGCCTGCCTGCACCCTGCCCACACTTCTGATTAGTGAACTGCTTGTCCTTGGCAGTAGAATGCAGTACCATGTGATAATGCCAAGGGTTTCATGGAAATACCCCTCTTTTACAAAATAACACAAAAAGTTATCTGGATAGAATTCAGGCTAGGGAGGCCAAGAAGGGCATTTCATCTTAAACCCTCCCTTTACCATTGTGAAAGAGTCTTTTCCAGCCCTTTCATCTCTTAACCCTGTCAGAGAGAGCCATTCTCCCTTTCCCCAGCCCCCAGCAGGCCACTTCCATTTTCACCTGAGTGGAACCCAGGCCAAGGGCTAAGCATGGCCCTCATTTATCCTCACAGCAGCGGTCCTGTGTGGTGAGCATTATTCTTGTCCTTTTTAATGTGGAGAACACAGAAACTGGGAGAGGCGAAGCTGCCTATCTGTAATCTACCATCAGCTTACAAAGCTAAGCTGCAAAGGCAGGCCTCCTACTGAGGGTTCTGCAAAGACCCTGAGCACACGCACTATGGATGGGGCAAACCCACTTCCTTCTAAACATGCCTGACACCATTCTCTCCCTACAG
Seq C2 exon
GAAACTGTGCCCACTATCAGAAGGGAGGATGGTGGTATAACGCCTGTGCTCACTCCAACCTCAATGGGGTCTGGTACCGTGGGGGCCATTACCGGAGCAGATACCAGGACGGGGTCTACTGGGCTGAGTTCCGAGGAGGCTCTTACTCACTCAAGAAGGTGGTGATGATGATTCGGCCCAACCCCAACACCTTCCACTAAGCTCTCCCTGCCTGGCCACTAACACCATGGCCAGAAGCCATCCCAGCCGTGTGACCTCAGCACAGCTCTTCGCTGGCCCACCTCAGGCTGGAGGACTGTGCTTTCCAATGTGGCTCTGTCAGACGATGGAAATGAACAGTGTTCTCTGTCCCTACTGCGTTCTTTTACACCTAACAGCTCCTTGTATTCCAGGATAGGATAGAACTGCAGAGTCTTCCAATCAGTTAAGTCCCTTTAATAAAGACACAACTGCCAATATCGCCAGATCTGACAGACATGCACACGAGCCACCAGGTGTATGCTCTTAGACACACATCACACGTGGGATGTCGAGATACACATATGGGTTTCCACATATACTTACCTTTTCCTGCTCAGTTCTCAGGTGCTGACTCCAGCACCATAGCTTTGCGCTTAAGACAATGTATGTCTCATTGTCTAAGGACAGAACAGGCATTGTAGCCCTGATTTCAAAAACAGTCCTTGGCACTGCCTGGATTTTCCCAGAATGTCCTCAAGCTCATCTCTCACATAGGGGCTCCTGGCCTTCTCTCCTTGAGCCCCACCTCCCCTCAGACTGTTGCACTTCCCCTCTCAGGACGGCTCAGCATCCCTCCGTACAGTTACCCCTCAGCCTGCACCTCCTGTGCCTTAGTCTCTGGCTGCTCACTGGAAGTCAAGTCCTCTTCTCCCTGCTCCCCTGGCCTCTCCTTTTCTGCCACACAGAGCTTTATTTCTGGCACAATTCGTTGGCCTCTGGGCAGGAAACAGTCTGGGCTCAGGTCCTGGCTGAGAAGGGAAGGCCAGGCCAGAAGCCACAGAGGCAGCGGCATAGACCTGTATTCAGTTCTGCACCTTCCATTCATACTTTAGCCTCCACAGAATTTTAACCTCTACACAAACAGTACCCTGCTTTGCCAGAGACACCCCACTGGAGAGAAGTCGCTGCCAATAGGTTGGGGTCCCCAGACAGCTGCAGATTTGAGGTCCTGTGCTCATGGGGAACAATCTTCACCCTGTCACCAAGCTACATCTCCTCAGAAGATGAGGCCACAGAAAGAAAAACTGACTTTCCATGAGTTGCCATGCCATCAGGGGCTCCTGACACACTGCAGCAGGGTGGCTTCCTGAGTCTTGTTTAGAGTTACCAGATGACTGCAATGCCAGGGGCAACATATAAGTCAAGAAGTTGAGACCCTCCCAGTGGGTGTGTGTGCCAGGTGTGTGAGGTGTGGGGCATTTGGTACTGTCCACATCTGGGTGCACTGCCCTGTTACCTCAGCATTTCTCCCAGTGTACCATGTAGCATGTTCTGTGTATATATAAAAGGGAGGTTTTGTTCGTTTATGTTTTTAAAAATATATTGCCAGACACAAATCTGTGTATTGTAATGACACAAATCTGCAATAAAAGCCATCAGTGTTACGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004105:ENSMUST00000004208:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(41.9=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(27.9=89.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types