RnoINT0017317 @ rn6
Intron Retention
Gene
ENSRNOG00000016678 | Angptl2
Description
angiopoietin-like 2 [Source:RGD Symbol;Acc:620004]
Coordinates
chr3:12289871-12292663:+
Coord C1 exon
chr3:12289871-12290141
Coord A exon
chr3:12290142-12292204
Coord C2 exon
chr3:12292205-12292663
Length
2063 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GACACCATTCTCTCCTACAGGAA
3' ss Score
10.08
Exon sequences
Seq C1 exon
CAAGGGTTTGGGAACATCGACGGCGAATACTGGCTGGGCCTGGAGAACATCTACTGGCTGACGAACCAAGGCAACTACAAATTGCTTGTAACCATGGAGGACTGGTCTGGCCGGAAGGTCTTTGCAGAGTATGCTAGCTTCCGACTGGAGCCAGAAAGCGAGTACTATAAGCTGCGGCTGGGGCGTTATCACGGCAACGCAGGCGACTCCTTTACCTGGCACAACGGCAAACAGTTCACCACCCTGGACAGGGACCATGATGTCTACACAG
Seq A exon
GTAGGAAAAGTAGAACCAAACCTAGGTATTGAACAGGGATGAGAGATCCACCAACACTAGAGGCCCTGACTCCAGGGCCTGGGGCAAGAAGAGGCCGTTGTGACAGGCAGTTTGGTAAAGTGAGAGACACTGGCTCTCAAAGTCCCTTTCTTCTGCCCACTGCCCTCAGACAAGTGGAAGCAGAGGTGCACAGATCTCACAGATGAGGGCTGCCCTGGGCCAAGGCACTCATGCTTCTCAACTCTGCCTGAGAACGTGTGTTCACAGTCCACTGAGGCTGCGTCATGCACTCTACACTCCAATGCTGGCCAGGCAGCCTCAGCGAGCTGCATAATCTCGACTGGAAGTAAGGACAATGCCTCCTAGAAGGTCAGGGAATCGTAGGAGAGCATCTGCCTCAGTGTCTGGTCAGGGCGCAGCATGCAGTGAGGAATCTGCATGGTGCTCTCTTACTGGCTACCCGTAATGTGAAGGCAGTACTAGAAGAAAGCCACTAAGAGGAAACAGGTAATGGAGAAGAAGTCATTTGTCTGTATTAGATCCTCAAAGCCAGGTCTTAACTAACCAAGAAACAAAGAATACAGACAAATCCAAGATGCCCAAGTAGGCTTAGCCTTAAGTATAAACACCCCATGCCCATGTCCTCCATTCCAGCTCAAGGCTTCAAAGCCTCTGACCCAGAAACATTTCGTGAGGTCCAGGGCCCCAGAGGCTGACACTACCTCTGAACTGAGACTTCATCTGTTTCCTAGGCAGGCAGCCCATGCTACCTAGCCACCCGTTATGTTCTGGTCTGAAAGTGGACCTTGTCCCTTTGAGGAGTGAGCTCTGGGGACTGTCTCAGAAGCAGCTTATGCTTCAAGTGATCCCTGATACCTACATATGAAGTCAGAAGAAACTCATCCCAGGTCCCCAAGGCTGTAGTGGATAGTTTATACAACTTCAAGGCCAGACGGAACAGGGCCTGCCTGTCCTTATACCACAGAGATCTAGCTGTTCATTTTGGCACTGAACTAACTCTGCTGTAAGGGCCACAGAAAAGCAGCCATTGCTCTGTAGTGTGTATGGGGTGAGGGTGGGGGTGGGGCAGGGTGTCCTCTGAGCCAACATTACAAAAGCTTTCCGAAAAGGCAGAAGGATGGCCTTCATGTTCCTGATGCTGGGCTGTGGGGCTACAGCATGTCTTTGAAAGCTATCATAGGGAGTAAAGAAACTGTCAGATGGGGTTCGAGGGTAACAGGGCTGGGGCCAGGGTATGCATAGAGAGACTGTGGGGTCTCTCCCTGTCCACCCAATGCAGTACTGCCACTTGATCCTAGTGTGTTAGGACGTGGCTAGTAGAAGCCCCAAGAGAAACTCTAGGAAATATGGGACAGCTGAGGTTAAGGCTCAGCTGAAAGCTGCCTGTGACCTCCTCACCCTCCTCCTGTGACTTCTACCGGAGACAGCTCCTCCTTGAGGAAGGGGTGGCTCTTAGGACCAGACCCCAACTAAGTCCAGGTGACCGGACTCTTCTTGTCCTCCCTCTGTGGGATACCATGCATGCCTGCTTGTACCTTGTCTGCACTTCTTATTCCTGAACCGCTTGTCCTTGGCGGCAGGGTGCAGTGCAATGTGACAATGCCAAGGGTTTCATGGAAATGTCCCTCTTTACGAAATAACACAGAAAGTTATCTGGACAGAATTCAGGCTGGAGAGTCCAAGAAGGGCATTTCATCTTAAACACCTCCCTCAGCCATCTGAAAGAGTCTTTTCCAGCCCTTTCAAATCTTAAAAATTGTAGAGAGAGCAGTTCTCCCTTTCTCCAGCCCACAGCAGGCCACTTCCATTTTCATCCCTGAGTGGACCCCAGGCCAAGGGCTAAGCATGGCCCTTATTTACCTCACACAGTGCCCACCACGGGCATTGTTTTGTCCTTTTACTGAGAGGCTAAGCCGCCTATCTGCAACCTACCATCAGCTCATCATAAAGCTAAGCTGCAAAAGCAGGCCTACTACGGAAGGCTCTGTGGAAGACTCTAAGCACACACAGCTTAACATTCCTGACACCATTCTCTCCTACAG
Seq C2 exon
GAAACTGTGCCCACTATCAGAAGGGAGGATGGTGGTACAATGCCTGTGCTCACTCCAACCTCAATGGGGTCTGGTACCGTGGGGGCCATTACCGGAGCCGATACCAGGATGGGGTCTACTGGGCTGAGTTCCGAGGAGGATCTTACTCACTCAAGAAGGTGGTGATGATGATTCGGCCCAACCCCAACACTTTCCATTAAGCTCTCTCTGCCTGGCCACTTACGGCATTGCCAGAAGCCATCCCAACTGTGCGACGTCAGCACAGCTCTTCACTGGCCCACCTCAGGCTGGGAGGACAGAGTGCTGGACTCTGCTCTCCAAGTGGCTGTCAGATGATGGAGATGAAAGGGCTTCTCTGCCCCTCCTGCCTTCTTTTACACCCAGCCATCCCTGTATTCCAGGACAGGACAGAACTGCAATCTTCCAATCAGTTAAGTCTTAATAAAAATTTCAACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016678:ENSRNOT00000022585:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(41.9=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(27.9=89.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]