HsaINT0007999 @ hg19
Intron Retention
Gene
ENSG00000136859 | ANGPTL2
Description
angiopoietin-like 2 [Source:HGNC Symbol;Acc:490]
Coordinates
chr9:129849628-129854219:-
Coord C1 exon
chr9:129853949-129854219
Coord A exon
chr9:129851418-129853948
Coord C2 exon
chr9:129849628-129851417
Length
2531 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CACTGCCTTCTCTCTTGCAGGAA
3' ss Score
12.63
Exon sequences
Seq C1 exon
CAAGGGTTTGGGAACATTGACGGCGAATACTGGCTGGGCCTGGAGAACATTTACTGGCTGACGAACCAAGGCAACTACAAACTCCTGGTGACCATGGAGGACTGGTCCGGCCGCAAAGTCTTTGCAGAATACGCCAGTTTCCGCCTGGAACCTGAGAGCGAGTATTATAAGCTGCGGCTGGGGCGCTACCATGGCAATGCGGGTGACTCCTTTACATGGCACAACGGCAAGCAGTTCACCACCCTGGACAGAGATCATGATGTCTACACAG
Seq A exon
GTAGGAAAAGTGGAGTCAAACCCAGGTGCAGGGTAGGGAAAAGAGGTCAACCAGAGCCAGAGCCCCTGACTCCAGGGCTTGGAAACGGGAAGATCCCAGGGTGAGAAGCAGCTGGGCCAAGCTGCCTGACCCTGTTACCACCCCCTGAGGGTCCCTTCTCCTGCCCACAGGTCCCCTTCACAAAGCTGGGTCACAGTGGCATTTACAAATTAAGAAAAAAAAAATGGGATGGGGCGAGACATAAAGAGGTATACAAATCACACGTACCAGGGCCAGCTGGGGCCAATGCAGAAAGACATGTGTTGGGCTGTGGCCTCACCACTTCTGTCCCAGGCACCTGGTATAGAGCTAACCAACTGCGTAGGCTCTGGGCCACACACCTGGGCTCCAGTGCTGGCCCCACCTCCTACCAGCCATGTGTCCTTGGGCATACTGCTAAATCTCCGTGGGTCTCAGTTTCTGCATCTGGAAGTAAGGACAAGAACTACATTGCAGAGTAGGGAGAAGGGTAGAGAGAATGTACCTAAAGTGCTTTGTCTAGGATTTGGCACATAGCGAGGGCTCCATACAAACTGGCTTTCTTCATGGTCACTGTTACTGCATGTAATGCTAGTGCAGTGCTGAGAGGAAGCTATTAAGAGGAAAGCAGATAGGAGAGAGAAAGTGATTTGTCTAAGATCACATGCTTCAAATCTAGGTCTTTACTAAGAAGTCTTTATTAAACAAAAAACAAGAGAAAAAAACAGAAAATCAGAAGAAACAGAGATATGGTCTGGCCCTGAGTCCAGATATCAGCCTCCCACACAGTTAATGCCTCCCCAGGGCCAACACCCAGTTTCTTGAGATGAAGGCCTCTCAGTCTGCCATGCTCCTCCCTGAGGCTGGCACCACCTGACGGCCGATGCTGCCTCCAGGCTCAGGCTGTCTGCTCTCAAGGGCAAACCCAGTCCCCTCCTGCCTCCATTTCCTATGTGGTCTTGGTCAGAAGGCTACTCCCTCCCACTTGAGAAGCGAGCTCTCAAGACTGTCCTACAAATGGCCTGTACTTCAGGCAGGCCCTGGAACCTACATACTAAGGTGGAGGGGATCCTCATGCCAGGTCCCCATAGCAGCCACATTCTGAAGGGTAATTCTCCCAACATCAGGGGACAGGAGGGACATGACCTGCCCATCCCTGTATCACACAGACACCTCTGTCCGCCCACTGACACTGAACTGGCCTGGCCCGAAGGGGCCCTGGAAGAGGAACAGGCCCTCATTCTGAAGCAGTAGGGGCTGCCGAGGCTTCTAGAAGAGCAGGGCAGAAGGATAACCTTCAGAGCTGGTCAGACCCTGGGACACAGGGGCTGCTACAGCCTTTCTGGAGGGCCACCTCCTTAGGGAGCGGAAAGTGTATTCTATGATCCAAACTCAGATCTAGCCAGCAGCAAAATCAGTAGCTGGCAAGGTCCTTGTCCCTGGAGGTGTGTGGGACCTCCGCTGGCAAAGAGGAGGCTGGTTATGGCGTGCCCAAGGATCTCCCTGCTATACCAGTCCAACACTGCCACTTGGTCCCTGTGGCCTGGAATCATGGCCCAGAGGGACCCCCAGAAAAACTCTGGGAAAACCTGGCTCCACCTCCCCTCTTGCTTTCTGCCTCAGACTGAGTGCGACCTCCTCACCTCATCCCACGGCCTCGGCCACCTGCTCTGTTGGGCCCTCCAACCCACAATTCTGACTGGAGCAGCCCCTCCCCTGAGTACGGGGTCCCCTTGCCAGGCCCAGTCAGGAAAGTGGGGACCCCCCTTCACTAAGAGCAATGCTGGCAGATAGTGGCCCCCTGTCCTCCTGCCACAGAGTGCACTGCCCCTGCATGCCCGCGCACACCTTCCCACAGTTTTTACTGTTGTTCTGAACTGCTTGTCCTTGGCAGCAAAATTCAGCATGATGTGATAATGCCAAGAGTTTTATGGAAATATCTTTCCTTTGTGAAGTAATACAAAAAATTGTTTGGATGGAATACAAGCTGGGGAGGACTGGAGGAGCATTTCTTCTTAAACACTTTCTTTGTCATTCTTTAAAGACTCCTGATCCAACAGTTTCAACTCAAAAATTCCTAAGAAAAAGCTTTTCTCCCTCCCCGCCCACCTCAGGCCATCTCCATTTCCTATCAGAACACAAGGTGTGGAGTTCCCTTGGGGCCTCCTTTGCACCCAGCCCTGGGCTAGGTGTCAAGTACGCATCCTCATTCAATCCTCAGAGCCGCCCTGTGCGGCAGGCGTCATTTTTATTCTCATTTTACAGATGAGGATACAGTGGCTGGGAGAGGTCAAGTCACTTGTCTGAGATCACACAGCTAGTTAGTTACAAAGCTGAGCCTCAAAGGCGGGCCTGAAGCATGGCCTCTCACCACCCATGGAGACGGGTCCACCTTTCAAGCGTTCTTGCTCCAGATGCCTCCCAGAGAGGGCTTTGCCGAAAGCCCTGAGCACTATGGACGCAAGTAGAATGGCCTCCTCCCAGACACCCTCTCACTGCCTTCTCTCTTGCAG
Seq C2 exon
GAAACTGTGCCCACTACCAGAAGGGAGGCTGGTGGTATAACGCCTGTGCCCACTCCAACCTCAACGGGGTCTGGTACCGCGGGGGCCATTACCGGAGCCGCTACCAGGACGGAGTCTACTGGGCTGAGTTCCGAGGAGGCTCTTACTCACTCAAGAAAGTGGTGATGATGATCCGACCGAACCCCAACACCTTCCACTAAGCCAGCTCCCCCTCCTGACCTCTCGTGGCCATTGCCAGGAGCCCACCCTGGTCACGCTGGCCACAGCACAAAGAACAACTCCTCACCAGTTCATCCTGAGGCTGGGAGGACCGGGATGCTGGATTCTGTTTTCCGAAGTCACTGCAGCGGATGATGGAACTGAATCGATACGGTGTTTTCTGTCCCTCCTACTTTCCTTCACACCAGACAGCCCCTCATGTCTCCAGGACAGGACAGGACTACAGACAACTCTTTCTTTAAATAAATTAAGTCTCTACAATAAAAACACAACTGCAAAGTACCTTCATAATATACATGTGTATGAGCCTCCCTTGTGCACGTATGTGTATACCACATATATATGCATTTAGATATACATCACATGTGATATATCTAGATCCATATATAGGTTTGCCTTAGATACCTAAATACACATATATTCAGTTCTCAGATGTTGAAGCTGTCACCAGCAGCTTTGCTCTTAGGAGAAAAGCATTTCATTAGTGTTGTATTACTTGAGTCTAAGGGTAGATCACAGACTGTGTGGTCTCAACTGAAAGGATCACCCTTGGCATCTGTGTGCCTGGATTCTTCCAGAATGTCTACAATGCTAATCTCTCACATAGAGGTTCCCAGCTTCTTAAGAACCCCTTTTGGCACCTAATCAAATTTCAAAATCCCTCCCCCCACATTTTCATACTTTTCCCCATTCTCAGGACTTTTCACCATCCATCACCCACTTATCCCTTCATTTGACACCATTCATTAAGTGCCTTCTGTGTGTCAGTCCCTGGCCACTCACTGCAGTTCAAGGCCCCCTTTCCGCTCTGCTGTACTCCTCGCCTACCTACTCCTTGCCTTTTCTGTCGCACAGCCCCTTCTTTCCAGGCGAGATTCCTCAGCTTCTGAGTAGGAAACACTCCGGGCTCCAGGTTTCTGGTTGGGAAGGGAAGGCCAGGCCAAAAGCTCCACCGGCCGTATAGATAATGTACTCGCAGTTTTGTATCTTCCATTCATACTTTAACCTACAGGTCATTTGAGTCTTCACACAAATAATAACCTATCTGGCCAGGAGAATTATCTCAGAACAGAAGTCATCAGATCATCAGAGCCCCCAGATGGCTACAGACCAGAGATTCCACGCTCTCAGGCTGACTAGAGTCCGCATCTCATCTCCAAACTACACTTCCCTGGAGAACAAGTGCCACAAAAATGAAAACAGGCCACTTCTCAGGAGTTGAATAATCAGGGGTCACCGGACCCCTTGGTTGATGCACTGCAGCATGGTGGCTTTCTGAGTCCTGTTGGCCACCAAGTGTCAGCCTCAGCACTCCCGGGACTATTGCCAAGAAGGGGCAAGGGATGAGTCAAGAAGGTGAGACCCTTCCCGGTGGGCACGTGGGCCAGGCTGTGTGAGATGTTGGATGTTTGGTACTGTCCATGTCTGGGTGTGTGCCTATTACCTCAGCATTTCTCACAAAGTGTACCATGTAGCATGTTTTGTGTATATAAAAGGGAGGGTTTTTTTAAAAATATATTCCCAGATTATCCTTGTAATGACACGAATCTGCAATAAAAGCCATCAGTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136859-ANGPTL2:NM_012098:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(48.4=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(32.3=89.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)