GgaINT0124245 @ galGal3
Intron Retention
Gene
ENSGALG00000004142 | F1P4F0_CHICK
Description
NA
Coordinates
chr17:6271020-6272324:+
Coord C1 exon
chr17:6271020-6271133
Coord A exon
chr17:6271134-6272245
Coord C2 exon
chr17:6272246-6272324
Length
1112 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TTTCCTCCATATCTAAACAGGCC
3' ss Score
10.06
Exon sequences
Seq C1 exon
CCCACCTCTCACACAGTTTTTTCTGGAATGTGGTGGTCTGGTCCGTACAGATAAGAAACCAGCACTATGCAAAAGTTACCAGAAGCTGGTGTCTGAGGTTTGGCATAAGAAACG
Seq A exon
GTGAGTGGTCACTCTGTTCTCATCTGTACAGATTTCATATTTATGTTAGTTCTGAAATGTCATCAGCAAAAAGAAATGGTGTCTTCATTGATAAGTGCATCTTCTAAGGCAGACAATTCAAATGCTATACAGACAGGTATGCTTGGATTCCCTCTTATCTAGGAGATCCTGTGTCATGCTGCCAGTGATAAAAACGGGTGGTGGTGGTAGTGATGGAAAGAACACATTCTTAATGTTGTAACTTTAAAAAGGGAGAGATTTCTTTATAGCTTTCCTGGTGGCAGTGAAGAAAAAAATGGTGTGATGAGGGAACACTTTGCTATTTCTGAGTAGTTTGCATGGACTAACCAGCACTTGAAGGAAGTGCTCTTGATCGTCAGAGGGACCGATGATTTGGATGGAAGAAGTGATAGAGATCTGACACTGAGGTTTTACCAAAAACTGAAAAATACAGGTGACTTTTTGAGAAATGTTTTCTATTGGTTCAAATTCTAGACTGGCGCAACACAGTGTAAAATAACACAGCTCTGTTGAAATTTAAAGATGTCCGTTCTGTGAAACTAATAAATTGGGGAAAAATTCAAGCTAGGAATCTGCATGGCATTGTGTGTTTGCTTTGTGTTAGTTATTAACAAGGGATAAGCAAGATGCAGAGCAATACTGTGTATTTAGGCAGCAGGCTGTAGCCATTGAAGCACTATCACGTCAATTTCATATTGGTTTTGACTTACCTCATTTACTTGTCCCCCACCAGCCCACCTGTCAAACATGCTGCTGCAAAACCAAAGCAAGTAACTCACTGCCAAACCCTGCTCTGGGGAGAATCACTTGAGACAGTTCCAGGTGTGGACAGAGCTTCAAGTTAAAGCGTGCTCTAGGGAAGGTTCTCTCTAGAAGGAGAGAGTGAGATGACTGTGAGATGTTTCCTCTCTCTTGATTTCTCTATCAGCTGGGTGATGTATAAATTAAGTCCAGGCTTTGCAGGTGCATAATAATCTTCCATCCTCCTTAACTAGTTACCACACCCTGTTCTGTTGCTTATTACACAAACTGGCTCCAGGCCTGATAAGCAAGCTGACTTTTGTTGTTTTTTTTCCTCCATATCTAAACAG
Seq C2 exon
GCCAAGTTATGTTGTTCCAAGCAGTCTGTCCCATGGAATTAAACTCGTCAACCCCATGTTCCGAGGCTATGCACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142:ENSGALT00000006585:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(55.9=100)
A:
NA
C2:
PF0044324=UCH=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACCTCTCACACAGTTTTT
R:
CTGTGCATAGCCTCGGAACAT
Band lengths:
190-1302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]