GgaINT0124412 @ galGal3
Intron Retention
Gene
ENSGALG00000024004 | C8G
Description
NA
Coordinates
chr17:895455-896245:-
Coord C1 exon
chr17:896106-896245
Coord A exon
chr17:895542-896105
Coord C2 exon
chr17:895455-895541
Length
564 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
GTGCTTCTCTCCCTGCACAGGGA
3' ss Score
10.72
Exon sequences
Seq C1 exon
CTGGTGGGGAGGTGGTTCCTGGTCGGCGTGGCGTCCCGCTGCAGCTACCTGGCAGAGAACAGCCACCGGCTGGAGGCCACGGCGATGACAGTGGCTGTCCCGGATGGGCAGAGCCTGGCCATCAGCACCTTCAGGAAGCT
Seq A exon
GTGAGTGATGCTGGCTGCTGATGGGATTGGATGCTGCAGATGGGCTGGAGCAGGACCAGCACCTGGCTGTGGGCTCCAAGGGGGGAGAGCTGCCCTGGAGCAGTGCAATAGGATCTCTGGGATGTTTTGTACTAGCAGTCCTGATGGTGGTGAACCTGGCACCCTGCAAGCCACAGGGCTGCCATCACAGGGTGGACTTAGGGTGCCCAGGTGGGATATGGGACAGGCAGCCTGGGGAGACTGGGGCACCAAGCAGGTGTGTGGCTGTTCCACGGCCACCTGCACGGGGATTGCTTCCTGAGGGCTCCCACAGCAGCAGCAGCTCATGTCTGGCTGTCTGTGGGTACTGGATGGCCATGGGGTCACACAGCTTTGTGTCAGGGATAGGAGCTGCAAGGAGGGGTAGGGGTGGCTGGCACGTGGTGCTCGGCAGTTATCAGGCATCCCTTACATCAGTGTGCAGTGGAGAAAACCTCCTGAGAAAACATTCCATGTACAAGCTGCAAGGGCAGAGCTGGGGACCAACTGCAGCCTGCCCTGCACTGTGCTTCTCTCCCTGCACAG
Seq C2 exon
GGATGGGCAGTGCTGGGAGATCAGGCAGCGCTACGTCCCTGAAGGAGCCCACAGGCGCTTCTCCGTGAGAGGTGAGCACAGGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024004:ENSGALT00000040477:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(32.6=97.8)
A:
NA
C2:
PF0006118=Lipocalin=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGGGAGGTGGTTCC
R:
CCTGTGCTCACCTCTCACGG
Band lengths:
222-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]