BtaINT0029630 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010520 | C8G
Description
Bos taurus complement component 8, gamma polypeptide (C8G), mRNA. [Source:RefSeq mRNA;Acc:NM_001110076]
Coordinates
chr11:106285824-106286134:-
Coord C1 exon
chr11:106285998-106286134
Coord A exon
chr11:106285895-106285997
Coord C2 exon
chr11:106285824-106285894
Length
103 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CATGATGGCCGTGCCCCCAGGGA
3' ss Score
7.25
Exon sequences
Seq C1 exon
TTCTCAGGGACCTGGCTCCTGGTGGCCGTGGCCTCCCCATGTCGCTACCTGCAGGAGCAGGGCCATCGGGCTGAGGCCACCACTCTGCACGTGGCTCCTCAGGGCTCAGCCATGGTTGTCAGCACCTTCCGAAAGCT
Seq A exon
GTGAGTCCCAGCGAGGACCCCTGAGCCCACCCCAGCTGCGGCCTCACCCGGGTCGGTGTGCCCCAGCCTGCTGGGCATCCTCCCATGATGGCCGTGCCCCCAG
Seq C2 exon
GGATGGAATCTGCTGGGCAGTGCGGCAGCTGTACGGAGACACGGGACGCCCAGGGCGCTTCCTGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010520:ENSBTAT00000056838:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(40.7=95.7)
A:
NA
C2:
PF0006118=Lipocalin=FE(22.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCAGGGACCTGGCTCCT
R:
GCGTCCCGTGTCTCCGTA
Band lengths:
186-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development