RnoINT0027499 @ rn6
Intron Retention
Gene
ENSRNOG00000028701 | C8g
Description
complement C8 gamma chain [Source:RGD Symbol;Acc:1309074]
Coordinates
chr3:2725534-2725920:-
Coord C1 exon
chr3:2725784-2725920
Coord A exon
chr3:2725605-2725783
Coord C2 exon
chr3:2725534-2725604
Length
179 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TTCCTTCTTCCCCTGCCCAGAGA
3' ss Score
8.14
Exon sequences
Seq C1 exon
TTTGCAGGGACATGGCTCCTTGTGGCTGTGGGCTCTGCATGCCGCTTTCTTCAGGAGCAGGGACACCGGGCTGAGGCCACTACATTGCACATAGCTCCCCAGGGTGCAGCTATGGCTGCCAGCACCTTCCGAAAGCT
Seq A exon
GTGAGTACCAGTGGGGCCTCCATCTTCAGCCCAGACTCTGAGCCCACCTTACCCTGCCCTCCTGACCCTGAACCTCATCTCTAGCTCTTCTGTGGCCTAGATAACTATCCCAACTCCTGGGTTGGAGTTCTTAGAGCCTCGGTGCCTCCTCTTATAACTTTCCTTCTTCCCCTGCCCAG
Seq C2 exon
AGACGGGATCTGCTGGCAGGTGCGCCAACTCTATGGAATCACAGGGGTCCCTGGCCGCTTCTTGCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028701:ENSRNOT00000061904:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PU(31.7=95.7)
A:
NA
C2:
PF0006118=Lipocalin=FE(17.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGGGACATGGCTCCTT
R:
GCAAGAAGCGGCCAGGGA
Band lengths:
202-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]