GgaINT0124474 @ galGal4
Intron Retention
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2664280-2674301:-
Coord C1 exon
chr17:2674038-2674301
Coord A exon
chr17:2664553-2674037
Coord C2 exon
chr17:2664280-2664552
Length
9485 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GACTCTCTGTCCTTATTCAGAGG
3' ss Score
8.09
Exon sequences
Seq C1 exon
ATCTTGATAACCCCAAGGACTTGGAAGTCAGTGACCCCACTGAAACCACCCTGTCCCTTCGCTGGAGAAGACCAGTGGCCAAATTTGATCGTTACCGCCTCACTTACGTTAGCCCCTCTGGAAAGAAGAACGAAGTGGAGATCCCTGTGGACAGTACCTCTTTTATCCTGAGAGGATTAGACGCAGGGACGGAGTACACCATCAGTCTAGTGGCAGAGAAGGGCAGACACAAAAGCAAACCCACAACCATCAAGGGTTCGACTG
Seq A exon
GTGAGTAACAGCTTTCAATGAGTGCTGTGCACCAGGTCCTTGGTCAGTGACTGGACTGAGTGCACCTTCACCTGATTTTCTGAGCCATGTCTGAGGAACTGCTTAAAAACATCCACTGCCTGCAAAGCAGGCTTAGCTCTGTCTAGCATGACAGGTTAATTGAGGAACAGTTGTGTTTATCCATGTTCACAATGCTTTCTTTGCTTACCCTTTGAGAAGGCTCACAAAGAACACAGCTATTTGTTCTGCAGGAAATGCAGACCTCATCGTTTGTTTGATGTGAGGCTGCTTTTTTGTACATTGTCTTATAACTTGTTTTATATTCTACAGCCAAAATCTAGGAGGAGGAGCAACCAGAATGTTTCTAATATTGCTTGTTCCTGCCTAATGAGTTCTCTTCACAGCATGCCTCCACCCGTCATGCTTCAGCAGGGTCAACAGGGCTCTCATGCTGCCCTTCCTCAGTTTTCTCATCCAAAAGCAGAAACAGGCTATTGTCACAAATCTGCTCACGGTCACTCTTTCCATTGGATACATGACTATTATCTTTGTCTACAAAGAAGGAGTACATTTCTGCCCTCTCCATTTGTACGAACCACTCTACTTAACTCGAACCAATGGACCATTCCTTGAATGAGGTTTCTCTGTGAAACTTTATGCTCCAAAGTTTGTTGCATACGGATCATATCTCAGTATAGAACATAAGTGAATCCTGAATCTTTACGTGCCGGTAGCCTAAACCTTGTGAGGTTCAGCCTCAGGTGCTGTGAGGGAGCAGAGGCAGTGAATAAGAATCAGTGGAGCTAGAATTATTCTCCTTAGCAGATGTAAAGGTTTTTAACCTTCTCCCCCAAAAGACCGCCTATGAGGTAAACACATCAGAAGCTGTGGATTTTGCAAACTTACAACTGGAAAGAGCTGAATGGCTTAAAAAAAATAAATAAATATAAATAAAAATAAAATAAATAAAAAACAGGACAAAATCCCACAGTTTCGTATTCCCAGGCAGGCAATATTCGTGCCAGCAGTACCTATGAATGCTTTATAGAGACAGGTAATCCAGTGCAGGAGAGAGTTATATGGTATTGTATAAACTGCAGTAAACCATAAGTACTGAATTACTTATTTGATGCATAAATCAGGTCTGTGTCCAATGCAGGGAAAAATTAGGGAGCACTGAAGCACACACGTACAAAGGGAAGCTGGAGGTTTACGTGGCATGATTGAGCAGGCTTTGATTTTTCCAAAGGGATCTGTTTCCCCATCTGTCTGAAGACTGAGCAGCCTCCAAAGAAGTGTGTGTAGAGGGTGAAAAGGCAGAAACAACATGCTGTGGAATTTCACAGTCTGGGCTTTCCAGCGCCAGTTTCCAAAGTTCCACAAGATGGCTTCTTTTTTCTTTGGATTATTATATATATATATTTTTAAAGATCATCTGGATGGTGTATTTGTTTTAAGTCTTCACTCAGAGCAGCCAGTAAACAAAGAGTTCTCTGCAGTGAGCCCTTAGAAGCAACAGCAGCAGTTGACATAACCTGGCATTGTGGCCCTCCTGCCTAGGAATGGACAAATCCATGCACATGAGCATGGGGAGGCAGAAGTGCTCTGTTCTCAGTACGTGGGGGGCCCTCAAGTCCTCAGGCTAAGCAAAACAAACTTGTTATTTTGCCCTCTCTCGCAGAGCTATGGGTGACATCAGGTCCATTGCACTTCTGAGGAGAGTGCTTGGAGCCACCAAGCAGAGAGAATAATGATTGATGTGCGAAGTGCCAGCAGCACAGCTAAGCCTGGACTGGCTCTTCTTGTCTGGAGGAGACAGTCCTATTATTTAGAGGGGCATGTGCTGTCCTCACTGAAGGGAGGCCCTGTGCTTTCTGGGATGACTGAGAATGTTTCCTCTCAGTTCCCTCTTCTTCAGTCAGGCTTTCTGCGTGCAGGCATCCACAAGTGTCAGGGCTTTCGTTTCCCACTGCTTACTTGAATTTGCTTGCTAGTGAATCATCTGTCACTGAGGGCAAGGCTTCTTTCTGCCCCAGAACTGATGCTCTGTTGGTGCCTTCTCTCCTCCCACACATGCTCCTGGTTGTCTTTGGATGTGTATCAACTTATTGCACACCAGTGGTCAAAACTGTCAGAGCTCACAAGCTTTGATCAAAGCACATGTCCTGAAACGTTCCGCACCATAGGATGGCAGCCTTGTGTCACTTCTGTTTCCTCCTATGGATGTAGTGCAGCTCCAGTTACAAAGTTATATTGATGTCTGTGTTTCTGCCTTCAAGGAATGCGAAAAATTGAATACTGAAAAGGAAAGTCTGAATGTTTCACACTGTAATTTGCTTGTTTGCCTCCCTGTAGCTCCACATAGTCTAACCCTAATGCAGGCAGTGACTCCTGGCCCAGAGGAGCGTTGGGCCCCTGGGAGCTGTGTTGCTCCAGTGGCATTAGGGATGCAGGAGGATGAACTGAGGGACCTCGTGGTTACAGACCACAGCTTTAAGTGTTTCATGGTATGTAAACACTGGAGCCTGTACTAGTATTGTGGTGGAGTACAAGGAGATGCCATTGGCAGCTGAACCCCCTGCAGAAACCTTCCTGCCCAGAGAACCCCTAAGTGATGTGAAGGCCGCCAGGTGAACACTTCCTATAAAATCAAGGTGTATGGGCTGGCTGGAGGATAACGCTTCCCTCCTCTGGGAGTTGTGGCTGCAACAGGTACCTCCCTTCTGTTATTAACTAAGGTACCACAAACCAGATCATCTCCAATTATGAGGTCCTTCCCAGCAAAGTGAGCCATTCTGCTAGCTCAAGGGACCTCTCTGGCAGCATGTCTGGAGAGTGTTACGTGAGATTGACAACTAATCTGCAGAGTGAGCACATAACCCATCTCTGAGAACGCTGAGCAGTCAGACTGCAGCTTTGTTCCATCTTTTGGTTCTGGAGCCCTGCCTGCACAGCACAATGTGGGCCATGGAGGAGGAGGAATGGTAATACATCAGGCTGTGGAAATAAATGAGTGCACATTTGCAAAACCAAGTGCCAACCTCGCATTCCTCTGCTGAAGGACCCAGATTGTGCAGCAACTGCTGACAAATCATGGATGTGATAGTGGCTTGCCTCTGGAAATGAGTTACACATAGGAGCATGGCTTGGAGAAGCAAGTTTTCCATTCTGTTGAATGTTTTTAAGAAGATTTATGCTGTTTACTGAAGACTTCTGTCTGTGTTGTGCATCATATCCTCTTCCTCTCCTGGCTTATTCTATTCTCAGATGCACTGCTCCTTTTGTATGTAGACTCAAAGGAACATTAGGAAGAGTGATTAGGTGAGACAGCTCGATGGGAAGCTGCAGTGCTGACCCCTAGGAAAATGGATTTACCAGTAAAGGTTGTCCATTTATTCAGCTGATTCCTCTATTGAGAGAACCTGGAATCTCAGATTTTCAGCAGTAGTTTCTGTAGTATTTCTGGACTCTGATATATTTCGGTGCTTTTCTCTGTGTTTAAGCAGCTGGTTGAAAGAGGGGAAAGCCGTTTAGCCAAAGTGCTCTTAAAAGAACACCAACACTTTGGACCATGGTTCTTCATTCCTCTTTCAGGGAACTGCAGTGATACCCTGCAGTGAGGCTGAGCTGATCAGAGATTCTGCAGTGAAACTTGTTGATAGCCTCTCTTGGAAAATAATGTGAGATCCAAGAGACGGGAGTGAGAAGTAATACAAAATACTCTTTGCTCCATCCCAAGTAACCGGGGAAATGTCCTGGCAAGACATTAGCATTCTTCTGAGTAAAACTCCAGTGAAGCATTACAGTGGAATTCCTCAAAAGGCCAGCAGCAGCAGTGTGGACATATTTTGGCCATATTCAGCCTGAAGATTTTAATAAGAGAATGATACTAAGAAGTATTCTTGTCTGAGAAAGAGCATATGTTTGTTGTCCATCAAGTTGCATTCCTCTCAGCTTTCAACTCTTTGGCATCTGCTACTCATTCATCTCACCAGCGTGAATCAGCCTTATCTGGCTGTCATCCACCCACCTAGAGCTCCTACAGCTCTGTTTTCTTCCCATCTATTCCCCTACTTTCTCTGTCCATTACTTGATCTCCATCCTGCTGCTGTCCTACAGTTCGACTGTTATCCAAACTTTCTGCCATCCATTCTGTAGCTAATACTCTGTCTGCTGAACATTGAACACTGATACTATCTATGGCATCAGAGTGCTTCCCATATGTTCATATCCTTTACATTTTCCTGTCTGTTGTACATTACTACAAAAAGACACAATATGTATCTATTACACAACAACACAACGTGTCCTCATCTGTGTGTGTTTGTGTTTATATACGCATGAAGAGTGTAGACCATTCTTTCTCACCCATAAGTTCATTTGTGGAGTCAGTGATTAAACACAACGTAATGATCAGAGATGCCAGAGATATCTACGTGCCATCATAGGGACAATATGTACACTGCAACCTCCTATGCGGTTGTCAAAGACCTCACAATAAAATTAACCCACTAGTGGGAGTCTGGGATAAGTATCAATGGGGATGGTCAAACAAAAATGAGGAAAAATGAGAAGCCAATTTATAATGATGTTTCACAGGGCTTTCTCAAGGACTCTTAGCATGTCAGCTTAAGGACATATAGCCTTATTTCTTCTCTTTCCCTTTTATTTTTGGACCTTTTTACTCCCCTTTTCCGGCTCAAGGTGCATGGCACTTCCCCAGTGGGACCATCCATGGCATGGTGCTTACTTGTATAACATACTAATTCTTCTTCATCCCCACTGGTCTGTTCACTTTGGTTATGCATGGCTCCCAGCAGAAATACTTCACAGTAAAGCCCAGCTGCTACTACACATTTTTTTGAGTATTTTTAAGTATTTCTGAGTATTCCTTTGAGTCAAAGAAACCTAATGAACATACTGCATGTCTTCCTGCTTTGTTCCCTGGGAACATTCCTCCATCACCCTACTGTGGTCAGATAACAGTTCTGACAATACAGTTACAAAGAAAGAATGAATTACACCAGCAGCTCTCAAGGCACATATGCTGATGTGCTGACAACACTGCTGTCTTCAGGCTGCACCATATGTAGGGCCTGGTTGGGGTCACATGCTGGTGGAATTCAGAACAACCTTTACCTAAGTTGAGAGTGTTATTAATATGGTATGTGTAATATGTAATAGATGTAAGTACAAATCACTGTTTGCCTCACAGACTTCACTCCTTCCTGGAGATGAGAAATTATGTTTTTACATCTGTGCTTGTTCTGAGAGTATATTTTCAAGATAAGAATTCTGCTTTTATTTGAAATCATTTTTAAATTGATCTTTCTGTTCTGAAAACTTTTTTCTTTCTTTTTTCTGATACGTGTGTGAATTTGGAGACAGATAACTGAATCCTGAGAACATATTCCTGCTGATCTGACTGATGGTGGTAGATGAGTTGCTTTCTCTTAATTGAATGCCACGGAGCATGAAAGCTAGGCAGTCACTGAGGTGTGAAATGATGTGGTTTTCCACTAATGAGGAGATAATTCTGCATGGCTAATTGAAGTGTCAGAAAAATCACCTGCCTGTTGCCTTACAGCTGTGATCAGAAACACATTTGCAGTTTTCTACAGCTCTCAGGTTTTTGGAATCTGACTGTGCTACAGGCTGTGTTCATAGATCTGTTCAGCATGTTGAAGGCCAAGCCTACTTCTCTTCCATCCTTTTGGATCTCTTTAAAGATTGCTCTAGTTTGTTTATCTTTTATTTAAGGGTCTTCTCCCCTTTCTTCAAAATTCAGCATGTGTCAAGGTGGATCACTCCTCCAAGCATGTTTTTACTTGGGTAGGAGGAGATTTAGCATGTTTCTGCGTGTCTCATTTCTCAGCCTGGATTTGATATTGTTGCGATAATTGGCATGCATTCCTGCTCTGGTTTGGATCAGTAGCGATGACTGCTGTGCTGTAGTCAAGATAAAAGGCATGGTTGAGAGATGTAGAGTTCAAATGCTTGCCGATGTAAATTAGCAAAGTTCTGTGGAGGTAGCTGAAGTGGACTGATTTACATCAACTGAGGATGAATCCATCCATTTCTCCACTGAAAGCACGTCGGCTGAACCCTGTGCTTAATGGTTGTGGTTCTGGATCTGCTGCTTAGTGTGGCTCTGTGTGGGAACCACATGCTTGGTGATGCTGCCTGTGCTTCTAGCTTGGATTCAGTCTCCAAAATAGAAGTACCCATCTGTCTTCTCTGATCTTAGAGCTCTTTAATGAAAGGACAGAAACTGTTTTGTAGCAGGTGTTAGCTGTCATGTGCTGTATTTGGGGGGTTATTATCAGGAGATTTTAACATGTAATTTACCTTTGTTTAGCACATCTAGTCACAACATCTGGACAACCAGACAGTGCAACATCATTTAATGCTACCAGTCCTGCTCCTACAGAGCTAAGTCACTTAGCAAACCCCAGCACTGGTCCCCATGCTCTGCATTCGGTGCCCACTGATCTTCCCATCTCAGAAGTCACTGATGCTCTTCGTGACCTTAACATAACCCACAGGACTTTCAGTAGTTTCACCCTGTCTTGGGCAGCACAGGATGAGGTATTTGATCAGTTCCTTATCACCCTGAAAGACCTGTCCAGTTTAAACAGAACTCAGGAAATCTTTTTGCTGGGAAACCAACGAGAAACAGAAATTACCAATCTCACAGCTGGCACTCAATACCAGATTAACCTCCGTGGAAGCACTCAAGGCCAGCTCTCTTGGGCCCTGGAAACTCTAGCTGCTACAGGTATTTTCTATGGATTCATTAGCCACGTGTTCCTCTTCTGCTTTGAAACACAGAACTTCATTTTCATACTGCTGTTCCACTGCAGAAATGCAAAGCTTTGTGAGTGATGCCTTTCTTCTTAGTTGTGGTTGTTTATTTATTTACTTACTTACTTTGTTTGCACGGGATAAAACTTATTGCTATGGAATGAGAGCCTTGAGTTATGTAGCATGGACAATGCCCCATGCAGCTTTGAAGGGATGTAGCATCACTTCTCTCTTTTCAAACTGCATGCAAAGAGAGGCATTGATGCATCTGCTATTTACAAGGCACATGGAAATAGCAAGATATTACAGGGATTTACTGGGACTGTGATTCAAAGCACAAAAGAAAGACCGCAAGGAGGTTACAGCTTGCAGCGCTGGCATGGAAGTGGTGATGTTAGAGAAAAAAAAGATTGCAACACATTGGGAGTATACCCTTCTGAAAACTTCTACCTGTTATCCCTATTATGTGAATTTCACGAGGAAACTGGGCTGTAGCCCCAGACCTCAGTTCAAAAAGTACCATTGTCAAAGTTCACACCTGGAGAACTGATCTGGGGACTAATGACCGTAGCAGACCACCTGCAAAAGAAATGCAATTTGTGATGTGAGATAAGACATTCACATAGAAATACAAAGATTATTATTGCACACCTAGAAAATAGTTAGAGCAGCCTTATCTCTCAATGGTTTGTTCTCTCTTTTTTTTTTTAAGTTAAGAAACATCATCCCTTGATATCATTTGCGATGACACTATGGTTGTTTTGTCATATATGTTGAATGCTTAACAGATGAGGTTTATAGAGGTCTTCAACCATCCGACTTAGTGCATGAGTTTATATGAGAACCTGTCAGCCCCTTGACAGCATGATGGGGTTTAGTGCACTTCTGTTTGAGACATGCAGGAGACATAACTGGGAGGCGGAGGGGCTCTGCATCTTGCACGGGAATGAAACTGAGCACTCTTCAGAGAAATGTGAATTGCTTCTAAGCTGTGATGGTTACTTATTATAATCATGCTTTAACTTGAAATATTTTGCCATGCTTTAACTTTTGCTTAGCTTCATTTTCATTTGAAGTTGATGTGTTTATTTTCTTTCCACTGCCACCAAAAATCATTATTGCTCATGCAACCAGTTCCTTTTCTGTTCCATTTTTCTTTTCTTTCAGCTAAATGGTGCTATTTAGCTCTGTGATTGTCCTGTTCCTGATAAAGCTAAACAGCTCCGGATTCCTGTGTTCTTTTATTGAACATCATTGTGTTATTTCATAAACCATCTCTTCCTTTCTGACAGGATGAGAAAAGCTGATCAAGACTTTGAGTAGTAGTAGTAATTTACTATATATTAGTGAATAGCACTAATGATAATTGACTGTCATCCATGAAACTGTCTGAAACAGCTCTGAAAATACAGCTCCACCTGCCTATGTAAAGCTATATGAGAGTCACAAAATAGGCTTTACATTTTTACAGGGAGATTTATATGAATAAAATTAAGGCTAATTCTCATTTATTTCAGCACTCCCTTATGCATCAACTCAAAATATATGCAAGGCTTTACAATGGAAGTTTAGAAAAGAAACATCGGATCCATTTCCCTTATAAATGCTCAGGAATGCAGACTGAGGTTATTTAGCTAGACTTTGTTCCTATTATAATGTTGAAGTGTCAACAATGCAAATAAATACTAAAAGTGCTAGAAGTGCCAGTGGTGATCATGTAGCAAGTCCAGGAGATGAACTCAATGATCCTCATGGGCCCCTTCCAACTCAGGATATTCTATGATTCGGAGATTTTCCATGTAGGAAAAAAAATACATTACTGTGTTATTTTCCCATGAAAATGCTAATTTTAAGGAATCAGTTGTATTTTCTCAGCATTGGAAGACTTGCTACTATTTCTGGGAAAAAGACCTAAACTTTCAGATCTGACAACAACTGAGAGTTAGCTCTGATGGCTCCAAGTTTCCTAAGCCACCCTTGTGATGGCACATGAAAATGCTGATTTCTGTGAAGGCAGATTTCAATTTTAGATTAGTATCAGTGTTTGAAAATCCAAGCTTCTCTGCCTCTGGGAAGGCTTTGGTGGCAGAATAATGTAATATGACAAAGATATGTCTATTAAATTGAAGACATGCAGACATAAAGAGATTTTCCCTTCTTTGCTGTTTTGGATTAGAAATAGTTTGGAAGAATAAATAGCATCTTTCAATTAAAAGTATAACCATCTGAATCTGAAGTACCAGAAGCTCAGAGCCTTGCTAGCCTTACAGCAGGCATTACTGTAGTATTCACTGTCACTTCATAATGGCAAATGCCAAACTCTTAATAGCTGCACTAAAGTGGTTATGGTAATACTTGTATCGTAGGGAGTTGTAATTAATATTAGCAAAATACATCCAGCTGTAAGATGGTCTATAAACTGCTTTCTGTGAGCACTCTTTCAGCATTAATGTGATTATTATTAATTATTATGGTTCTTTTCATACTGTTCTGTCTTGCCAAGTCTCCGAAGAGACTTTATGAGTTACCTGGGGCAGCTGGGAATGTAAATGTGCATGGGGGCGCATCTCTGTGCCACTTGCTTCCAAATGAAATTCATTAACTCTGAAAGTCATTAAGTCATACCTCATTGCCACTGGTCTGTAATCTGAGTAACTGACTGACTCTCTGTCCTTATTCAG
Seq C2 exon
AGGAAGAACCTGAGCTTGGAAACTTATCAGTGTCAGAGACTGGCTGGGATGGTTTCCAGCTCACCTGGACAGCAGCCGACGGGGCCTATGAGAACTTTGTCATTCAGGTGCAGCAGTCTGACAATCCAGAAGAAACCTGGAACATTACAGTCCCCGGCGTACAGCACTCTGTGAACGTTACAGGCCTCAAGGCCAACACACCTTATAACGTCACACTTTATGGTGTGATTCGAGGCTACAGAACCAAACCCCTTTATGTTGAAACCACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113:ENSGALT00000011523:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.236
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NA
C2:
PF0004116=fn3=WD(100=88.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]