RnoINT0153582 @ rn6
Intron Retention
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79829444-79836344:-
Coord C1 exon
chr5:79836081-79836344
Coord A exon
chr5:79829717-79836080
Coord C2 exon
chr5:79829444-79829716
Length
6364 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTGTCTCTGTCATTGTTCAGAAG
3' ss Score
7.47
Exon sequences
Seq C1 exon
AAATTGATGCACCCAGGGACTTACAGGTGTCTGAGACCACACAAGACAGTCTGACTTTATTCTGGAAGACACCTCTGGCCAAGTTTGATCGTTACCGCCTCAACTACAGCCTCCCCACAGGCCAGTCAATAGAGATTCAGCTGCCAAAGGATGCCACCTCCCATGTCCTGACAGACCTGGAGCCAGGGCAAGAATACACTGTTCTCCTCACCGCTGAGAAGGGCAGACATAAGAGCAAGCCTGCGCGTGTGAAGGCATCCACAG
Seq A exon
GTAAGTCATCCTGAGCTCCCGCAAGCCCTCTGCTACCTCTGGGTGGCAGCTTTGAGTCAGCCAGGCTTGTTACCACAGGCATGTGGTGCTCAGAGGAGAAACAGACTCCTTCCTCTCCTCACAAAGCTCTCTCTGCCACAGTGAAATGGCAGCTTCCTCGTCTTTCATGAAGATTGATGCTTCTTCCTCTATGTCAATGGACTGAACCAAGTTCTCTCATGGAGAGATGCTGACTTCTAAGCAATCCTGACTAGGAGAATGTAAACTGGGAGCTGTGTTTGTCTGTCCAGTCTCTTGTTGCTGTTTAATTTTTGCTAAATGGTAGTCTAAATTTTTTTTATTTCTGTTCTTTAATCTAATGACAGCTTTACCTTTCATTGTTTTAAAGATGCTCAGGATGTTGGATGTCATTATTTAACCTCTCTTGCCCTCCTCAGCATCACCCTGAGGAGAACTGCATTTGGTCCGGAGCCCGCCTCAGTGCCTTCTCACTTTTCTTTTTTTCTAGTCATGAAGAGTCTCCTGGTTCTCCTTGGTTGATCCCAGGTCCCTTCTAGTCCTATTAGCCTGCTCACGCACCAATCTTCTTTCCTGTCACTTTAATTCAGGGGCTGAACTGAACAGAGAGTCTGGAGCTAAAAATGGTTCTTCTTATATGAAAAATGACACATTCAATTTTAGCCATTAAGTTTTCAAGATCGCTTGAATTTTTGAAAGTGACAGGCTTAGCTTCCATTTTCATTAGCATGTATGTATGCAACTACGGCATATACTACACTGTGCTGGTGTTGGAAGAAAAGTTCGTCACATGATCATCATAGCCTGGTTGATCCCACTCTCCTTCTCAGAGTCCTTGAAGAAAACTAGAAGCTAGGAATATCAGCGAACAGGATGCTCAGAGGTCACTAGCACTGGTCACACAACACTAATGGCACCCAGCTGACCCTCAGTAGTCTGAAAGAGAATGACAAGGCAATTCAGAAATGTCTTGCAGGGCCCAAGTTATCTATTACTACTTCAACTAAATACAACAGAATTTTCAAATGTCAGTCTCCTTCATTAAATTGATCTGCCACCAGGTAGTACAAGAGAAAACATAATTGTTTCAAGTTGTTGAGAATCCAGGCTGCTTCACTTGTTCTATTCCACCATTTTCAGAGTTCAGCTCCTGTTCCCGAAAGGAGGTCAATGTCACAACATGGCTGCTACAATACCACCATCACATTCATATTCTAGGCAGTTGAATTGAGGTAGAGCCAGAGCTCCAACCATTGTTCTTTCTAGAGATTTAATCAATCATTTCTCTCTACATTTCATTGGCTATTCTTAGGTAACATGAGAAGGCTAGTCTCCTATAAGAACATGCCACTGTAAAGTCATAGACCTTTTTAAGGAACATAGAGAAATTTGTGAAACAGAAGGACAGTCTCTAATCGGAAATGAGTGCAGTGGTTAATTCTCGGAACAGTACACACCGCTCCCCACTGAGCTATGGGATGCTGAGACTGTCAGAGATGCTTGGAAGGAAAAGTTAATCAGATAGGGGAATAGAATCAAAGGGAGCTAGCTTTTATAGCCCAAGTTCAATAGTCTACCCTTACACAAGGAAGCAGAAATAGAAGAAGGAAGCAAACTCCTTGATTTTCCTCTCCTTCTACTCTTTCCTCTTTAATGAAGTCATTAATTAGTTCAACCCCCAGAAGGAGAGAACTCCCCCTGCATCTCTAGAGTCAAAGGCAGATGTTGTAAGATTAATATTTCTTACCTGTAGACGTTATGGGGAAGTGGAGAACTGATGGTGCTTGTGCGTTTTCTCCAAGGAATCCCCGTGTTTCAGCCACAGTAGTAGTCCAAGTCCAGACCTCTTCTATGAGGTGGCACCATATTGAAAGTATAGTTAATCTTCCCACCTTTCATACCTTAACCTGTGCTCCACAGAAAATCAAACTTGTACATAACAGCACCTTTCCATGGGCTGGGTGGCCCTTTAGAGTCCAACTTCTCTGGCCTAGCTTCCACTATTCATGCCCTTGGCCATCACATGGCTGTCCCCTTATATGCTTGCTGAACCTGACTGTGTCACCAGGCCTGCACTCCTTTTGTTATATTCTTATTCTGCTTCCTGTTTTCCACTTATCATTCTTTTTAGTCTCATCCATTTCAAGTGTTATTCAAGGGCATCCTCTGAGCAAGCTGTGAAAGGTACTCCCCTCCCCAACCCACCCCTGATGCTGCTCCAAGGTTCTGTGGCCACTTAACTGACTTGAGAATGGGCACTAACCACCTTACTGTCCCTGACCTCCTCCCATCCGTGAGCAGATTGTGGGGACAATCTCCTTTGTCTCCTGCTGCCTGCAGTACCTGGAATACATCCAAAGCCAGGGTGAGCGTCATGAACATCTGCAGAGATCCAGCTGCTCTGGGGCCAGCATTACCACATTTTATTTTCTCCTTTTTGTCCTTCTCTGCTTTAGCAGCTGTTTAGCACCCTTCTGGAGTAAGGAACAGGGTACTTATTCCCTGGGAATTTTTTAAGTTCGTGTAATATGAATGACAAAAGGAGAGCAGGATGACAAGAAAGGGGGACAATGAGAGGGAGAGACGTAAAAGGGAGGGAGAGTAGAAAAGGGGGCACGTTCTCTTCCAGAAGAGAAGGAAACAAGTATGGTTTAGCCTCATTCTCTCCTTCTGCTCCCTCCTCCCAACCCTCCCATACTCTCCTCTTCTGTTCTTTCAGTTTTTCTCTTTCTGCTTTGATATTTCCATTAACTAAACACTACCTAAAGCCAAGGCTATGAATTCACTTCGAGCAATAAGAGACATAAAGGAGGACAATAGGTATGGGCCAAGGACCATGAGGCGTATTTTCACAGCAACCTAAGAACTCAATAGTGTCTCACATGAATTTGGGAGGTAGAAAAAATGAAATTTTATTCCTTTCCACAGAAATTAAAGAACATTTTGCTCCAATTTGCCATTTTGATTTTCTATCAAGGAAACTGAAGCTTATCCAAATATTTATCCTTTCAATGTACATTTACTTAATATACTACGATTACATGCTATGAGTCAGACAGAATAGGTGGGATAGTCAGGCAAAAGAGAAACTAGAAACAGCGCACTGCAGTGGGAAAGATGGAAACAACATGCGAATGATGTAGTTCTGCTGTTAGAGGCATAAGGAGCCACAGGAGAATAGAGGCTCGTCCTCATCACAGCTGACAAAGGGGACGAAAAGCTCAGTGGAGTCTCAGAAGAGGTACTACCTAGATGAGTCCTTGAAGAGCAAAGGGAGGAGTTCAGGGAGAGTGCAGGGTCCTTTCCAGCAGGGGGAAGAGCATCTGAGAGGCTTAAAGTCAAGGGATATTCTGTAGTCATCAAGCTTAGCCCTGCTGTGTGTCCAAGTGGAAGAACAGCATTTCTAAGGCTTCGGGACTTAGGAGACAGCTGCAAAGCACAGATGTTCACGGGCTTTAGCTTTATTCTCGGTAGCTGCTGAGAACCACCAGAAAGCTTCGAGGCAGCCAAGACTTAATATTTCGAGTGTTTATTCCTAGAAAATGAGTTCAGCACCATTTGAAGCATCATTATAGTCTTCTGACTTTATTGAATCTTCCCCTTGCTGTGAGAGAATCACTCTCTCACAAACAAAGCATACAAAGAGGTATCTGCCTCCTGCCAGTCTATGGTAACCACCATCTATATACAATGGTGGGAATCTGAAAGGCTGACGACATGGCCAGAAATTCCTTCCTGCAGCTGCTCAGTCCACCATGAGCACAGATGACAGGAGACTTGGAAATTCTGATTTCCTAGGCCCACTGACATTTCTCAGAGGGTAGATTCCGAAGCACAGCTGGGAGGGAATGACAATTGCCTTTTCATTGTGGCCTGTAGGAAATCGAGAGGGTGCAAGTAGACAATGGGAACCCTTGGCTGCTGATGCAGTGAGCCCACAAGTATGTCATTCACCCCCAAAATGAAGAGTCAGCACTTACGCACAGCTTCCCAGGCTCCACTTCAACAATCGCCTGCTCTGTCTTTATTCAGAGCACCTCTCCACCCTTCTAAGTTTATTGGTGGAAGTTATCACCTTTCACATACCTGAGCATGTGTTGGGGGTCAGCTTAGTGCGGTGTGCCAACAGCATCCATTGTAGATATGAGCACACACCACCCACATGAAACAAAGGCCATTCTATATCTTTCTTGATTTGCCTGTGGAAGAGGGAAAGGTGGGGGAGTTAGATACCCAAACAGGACGGAAACTGAGCACCAATGGCAACAGCACTGTGAGATCTGTGAGTTCCTTCAACTGTGGGAAGAGGTGTGACGCGGGGGAGCCTCAGGGACACAGACAGAAACTGAAGTGCGGAGATGAAATGAGTCTCCGAAGCGCCTCCGTCTAATGTGCTCTCCCCGCTCTCTGTATCTGTGAGCACTTTAACAGCTTTGCCTGTGATGGTCTATAATCTCCTCCTCCCTCCTCCAAATTAGGCCATTCGCCCTACACTTCATGCAGCCTCTCATCTGAAGTCCATTTCAAGGGAAACAATTTGATTACTGTCATGATTAGAGATAAGGTTTAAATTCCTAGAGAGGAAAGAAAGTTACTTCTTCCTCACCATGGCACAAATTCTCAATGCCAGCAAAGTTTCTGATTGGTGGTTTTGGATAGCAGGAGAAGAAAAAAAAATTTGGGGGGGGTCTTGTTTTTGTTTGTTTGCTTGCTCAGATGTCAATTTCCCTTACATCTCTTTACACATAAAAGCTTTTATAATACTTGAGAAAGGAAGACGGGCTGAGGGCTGAGCTTACTTAAATCCCAACATGAATGATTTAGTCATGATTGGAGGCCCTGTTCCTGGCCTCACCAGAGCCCACAGTTTTAAGGATAACTTACCTCTTAATATCTCCCAAATCCATACACAGTACCTTGAGTTTGAAGTCTCCCTCCACATACATGGATAGTTGAGAACTTAGAGATGTGCTCCAAAAGCATGAATTTGGGTTAAAAGAGGAATCAATGGCTGTAGTGCAGGATCAGGTGTTATAAATAAAGGTTTTCTATACAAAGGAAGATCATAAAGCCTCTAGACTTTGAAGGCCAGCCCCAGCCTCTCCAACAGCTACTTAGCCATGTTATCTCAATACAAAAGCAGCCATCAACCACGTAGAATGGGGAAGGTATAGCTCTGCTCCACTAAAATTTCATTTATAACACAAAAGTATGAATTTCGTTTGATTTCCATGAACCATGAAATATCATGGTTCTTGGGATTTTTTTTCAACCAATGATTTCCAAATGTAAAAACTGTATCAGCCTTCTTACTCTTAGACATGGCCTACTAATTTTTCCTAGTTTATGTACCCATGTTCTAGGTCAAAATACATTTTAAAAAGTTGAGACATTGGAACTTTGTGAATGTGGGGTAATCTAAAAATCCTGAACGAAACAGATTTTATAAAAGCACTGCTTGGACAATTTGCAAGATAGCTTTTTAAAAGAATGTTTTCATGGTCATATAGGGATCACTTAAAATTGCCAGCCAAGTAAACAGAAAAATGACTTGTTTTTTTTCCAAAGGAGCAAAGGCAGTTCATGCCCTTCCATTTTAAGGAACAGTTTCCAGAGAGATCCTTTGTCTATAGGTCATGCAGAGTCCACTTAAACTCAGCCCAGGCAAATGACCCCCTTTCAGACAAGGGAGACTGTACCATGTTTCTGTGTTCTGGAGGCAAAGATGATGCATCCAATTTTAATAGAGCCTAATAAATTCTTCTCCCAGGTTTCAATTAGCTTCTTTCCAATTCTCAAGAAATGCTATTTCGAAAGCTTGTCAGCTGTCTCAATTCATTCAGCCTTACCAGTAATTTCCACTTATCCCTACTGAAGTGGTTTGTAAAAACTGACCTGAAACTCAGGAACTGAAAAGTCCAAATTGATCTATACTGAACTTCTAGGAGAGGCCAAGGCAGCACAAAGAGAAAGGAAGTCTAAGATCTAGGGATCTGCAAAATTCAGAGTTCTGGAAAAGACCCAAGACCACCTGAGGCTAATTCCTTGTAATGGAAACTACTTTGCCAACTGGAAACTGAGGCATGGAACTTCATTAGCAGATGAGTAGTTTTCTCTAGAACACTTGTAAACAAGAAAACATATTTCCAAAAGAAATTTCAACTGTTCAAAGGCAAATCAATGCTATACTAACCTATTTATTGCATTTTGTGGGGACAGCACCGCTGGGCATACAGGGACAACATCTTGGTTCAGATCTACAGGCCTTGGCCAATGGATTTGCCTGGTTCTTAAAGGCAAGCATTTGATGAATAGTATAACTGACCTTGTCTCTGTCATTGTTCAG
Seq C2 exon
AAGAAGTACCTTCTCTGGAAAATCTCACCGTGACCGAGGCCGGCTGGGATGGCCTCAGACTCAACTGGACTGCAGATGACCTGGCCTATGAGTACTTTGTTATTCAGGTACAGGAAGCCAACAAGGTGGAGACTGCTCACAACTTCACAGTACTTGGTAACCTCCGGACTGCAGACATCCCGGGCCTCAAGGCTGCCACTCCTTATAGAGTCTCCATTTATGGGGTAGCTCGGGGCTATAAAACACCCGTGCTCTCTGCTGAGACCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645:ENSRNOT00000084563:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NA
C2:
PF0004116=fn3=WD(100=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]