BtaINT0150606 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:106012823-106021564:-
Coord C1 exon
chr8:106021301-106021564
Coord A exon
chr8:106013096-106021300
Coord C2 exon
chr8:106012823-106013095
Length
8205 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CCATCTCTGTCATTATTCAGACC
3' ss Score
7.67
Exon sequences
Seq C1 exon
AGCTGGACACACCCAAGGACCTTCGGATTTCTGACCCTACGGAGACCAGCCTGACCCTCGTCTGGCAGACGCCGGTGGCCAAGTTTGACCGTTACCGCCTCAACTACAGTCTTCCCTCGGGCCAGCCAAAGGAGGTGCAGCTCACCAGAGACACTACCTCCTTCGTCCTGAGAGGCCTGGAACCTGGGCAGGAATACAGCATCCTGCTCACAGCAGAGAAAGGCAGACACAAAAGCAAGCCGGCACGGGTGCAGGCGTCCACAG
Seq A exon
GTGAGGTGGATGTGCTCTGAGCTCTCTCCAGACCCTCTGATGACCCTGAGGCTGGCAGACCCATCAGCCAGATTGTCTTCAAATAAGAAGATCAGATGGGAAGACAGGGACTTTCTCTACTCATGAATCCTCTAAATGCCGTTTGAGTCACTTACAGATCTTTTCCTCTTGTCCACTGACATGTCCACAGCAAAGTTCCCTAGCTGGGCAATCAATAATGGCTTTTAAATATTTCTTCCTAGGAGAACTTAAAGCATGAGAGTTTGTGCTTGTCTTTGGTTCTTTGTATTTTAATTTCGTGTTTTCATGGAAATGAATGTTTTTTTTTTTTTTCTTGTTTTCCCCCTCTTTAGCACAGTCCATTAACTTTTCATTTTATTTCTTTTCAAGATGACCAAGAGGTTCAGAGTAATTCTTTGGTTATGACCCATTAAATATTTTTATTCCAGGTCTTTTGCCCTCCTCTCAGGTTACCTGAAATGCTGCACACAGTCCTGTGAGCCTGTCACAGAGCCCTTCTCCTTTTTCTCTTACTCGTTAAGTGATGAACTTTGTTTATCCGTGACAGCTTAATCCTGACCTCCAGTATCCCTTCTAGCCCAAGTATCCTGTTCTTTGTACCTGCCCCCATGTTTCTTTAATGGCTAAATTGGGGGGAAAAAATCAGTTCTTCTTTTATGAATATGCATATTTAATTTTGGCTCCCAAATAGTCAAGAGGTATAGGTGGAAAATGTTAATTCTTCAGAATGTGATAAAAGCTTAGTTTCAGTTTAATTAGTATTTATTGAGAACCCATTGAATACATGGTATCATGCTGATATTTGAAGAAAAATTGATCGTGTACTTACTTAGCACTGTTATTTTGGCTCCTGTGCTCCTGCTCTTAGTCTGTGGGGAAGACCAGATAGTCTGAGTGTTAGATGGAACTCACCCAAAGAAAGGAAGTAGTGGGGTAATCAGGATAAGCCAGAGAAAGTGTCTTGACAGAGACACTATTCCAGCTGAATCTCCATAAGCAGAAAAGGGGTTGCTGTGATGGGAAACCCTTTGGAAATGCCTTGAAAAGTCTTAGTCATTTATAAATACTTTCACCTACACATAACAGAAATCTCAAGTTACAGAACTCTAGCAAGACACAGGGTGGTTTCCTCTCTCATAAAGTAAGTCGGAGGTTAGGTGGTTCGGTGCTGGCCCAGCAAGTCCAATTCTCAGGGATTCGGGCTCCTTCTCTCCTTCTCTTCCACTAGTCTTAGTCTTTGGCCTGCATTCTCAAAGCCACCCCCATGTCACAAAAAAACTGCTTCAGTGCAGCCTTCACCTCGGTGTTATAGGCGGCATGAAGGAGGAAGAAACAGGAACAACAGATAGTGCCTCCCAGACGAGTCTGTCTGGAATCCTCCCCAATGACTTCTTACATTTTACTGGCCACTTCTAGCTATAAGTCAGTCTAGGAAAGGTAGTCTTTGAGCTGTGTGCATTGCTGCCCACAGAGTTTGTAAGGAAGAGGGGGTGGGTATTTGGTAGACAAAGAACAGCCTCTTCAGAAAAGACTTCAGCCTGCAGGCTCCTCTGCTCGTGAATTTCCCAGGCAAGAATACTGGAGTGGGTTGTCATTTCTTCCTCCAGCAGATCTCCCTGACGCAGGGACTGAACCTGTGTCTTCAGTGTCTGCTGCACTGGCAGGAGAGTTGTTTTTGTTTGTTTGTGTTTTTTACCAGCTGAGCTATAGATCCGTTTGCTAAAGTGAACTTAGGTGGTCACTTCTATTGACTCTATGCATGGACTGCTTCCAGCCAGCTATGAGATGAGCATCAAGGATCCTTGGATGGGGCAGGGGTAGCCTAATCATAGACGAGGTGGGGAGAATAAATTGGGAAGAAATAAATCAATGGTAGATATTTGAATGGTTCAGCTTGTAAAACATGAGCTTGTTGTAAGATGTGAAGGGGCCACAAATGAATCAGAGAAATAAGAGAATAATTTCTTCTTCTTTCCCTCCTCCTCTTCTTCTCCCTCCTCTTCTTCCTATTCTTCCTCTTCCTCCTTCCTTCCTCGCTCTCTGTCTCCCTCTCTCTTTCCTTTTCCCTCAGTTTCACAAATGCTAGATTATAGAGGATTTCCTGGCTCCTCTCAGTCATCTTACCCTCTGGCCATGACCACTTTATCTCGTATCTCCAGCAGGGAATCCCCAGGCTTCAGCAGCTCAGGGAGATGAAAGCTTTCAAGTGAATCACAGGCTGGAATTACTTTGCCTCTGACTAAGAGCCCAGTTTGGCATCCCAGAGGCTCAGTGGTTTCATTTTCCCAGCCGTGCCTTTTTTAACACCATTTAAAGAAATCACGTTGTATATTTAAAGACATTCCTCACTCATTACAGGAAAAAGTGTGCAAAGTTCCTTGTATGGGTTCTTCCTCCACTGTCTCTGAAATATTTCTTTCTATGGCTTTCTCCATAGAATTATTTTATTTCATTAAGAGTGAGGTGGACATTTCTGTCTGTCTCCTGAAGTCTATCTTCCCAATAAGCATCTCGTACATTATCTTCCCAGTAAGTATCTCCTACATTTACTCAGTCGGTAATGCACTACAGCCATGTTCCATGCTAAGTTCTGGGGATACTAGGGCAATGGAGATAGGTCTGTGTTTCCAGGGAGCTCACTAGCAAACAGACACTTTCATTGCTGTAACTGGGGGTGTGGGGGTGCAGTGGGAGCAGAGGATACCTTCTAAGTATCAAGACAGGCTTAATACAGGACAAAGCCTTTGGGTAGACACAGAGGAGGCAGGCAGGACTGTGTTGTGGGATACATAAGGAAGTAGAAGTCCAAGCACCTGGCCTTGCTAAATACAGGGAGAAAAATGAAACAGGAAAAGTGGAAGCCCTCAGGGGAATGTACCATGTGGCTATGAGCCTTGAAATGTCAAAGGGCTGTAGGTTCAAACTCAGAAGAAAGGGCTTCCCAGCTCTGCATCTAGATTCTTAATAGCAGAAGTCTGAAAAACACTGCTCACTATCTGTGAGCTTTACAGAGAAAATGAGAAATCGGCTGCCCCAAAGCATCTTCCCCAGAGAATTCCAGGACTCTAGTCATAGCACTGAGCCAAAGCACAAGCCTTTTCCTGGATGCAGCATCAAGTTAAAAGTATGCATTACCTGACTGCCCATCATACCTGAAATATAATGCAGGGACCCTACCACAGGCTACACAGCCCTAAATAATTTGGTCGCTCCCGTCGCCCTGACTTGTCGCCCCCACCACTTGTCCGCTTGCTCATTTTACTGTGGGCGCCCTGGCCCTTCTGCTGTTCCTTACATACGCCAAGCAGAAGCCTTTGCACATGCTTCTGCTGCTGCCTATATACCCTCCTCTCCCAGGTCTTCACCCAGCATCTCCCTCATTTCACTCAGCTCAAGGGTCATCTCAAAAGACATCTCTGTCTGCCAGTCTAAAAGGATGCCCTGTCCTCATTCACCCCTTCAGACTGCTCCAGAGTTCCTCAGGACACTTGCCTGGCCTGATAGCACTCACTCTTTGGTTTACTTATCTATGGCCTGCCTCCTGTGTGCATGTGTGCCAAGTCGCTTCAGTCATCTCCGACTCTTTGAGACCCTATGGTGGACTGTAGCCCGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGATTCCTGGAGTGGGTTGCCACGCCTTGCTCCATGGCCTGCCTCCTACTTCCGACCAGAATGTAAGGACTGTCTCTTACTCAGTGCTGCAACCCCAGCGCCTTGAATACGTGGCACAGGCTTCAGGAGCCTCTGGGGACCCCAGCTCCTCCAGAGGCAGTATTTCCACTGAATCTTCTGGTCTTTTGCTTTCACCCCTGCAGTAACAGCCCAAATTCTCTCCCTTAAGAGTTAAGGGAAGGGAAGCCGTTCTCCTGGAGTCTTTAATTAAGCTTGTGCTCAGTCGTGTCCGACTCTTCACAACCCCATGAACTGCAGCCCACCAGGCTCCTCTGTTTACAGGATATTCCAGGCAAGAATACTGGAATGGGCTACCGTTTCCCGCTCCATAATTAATCTTACTCTGAATAAAACTGGGAGGAAAGAAAGAAGGAAAGATAGGAGGGAGGGAGAAAGAAAGAGGGAATAAAGGAAGGAAAGAAAAAAGGCACTAGTGGTAAAGAACCTGCCTGCCAACGCAGGAGACCTAAGAGATGCAGATCCAATCCCTGCGTTGGGAGGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGGATTCTTGCCTGGAGAATCCCGTGGAAAGAGGAACCTGGCGGGCTACAGTCCATAGGGTCGCACAGAGTCAGACGCGACTGGAGCATCTCAGCATGCACACATCCCTGTTAGCACAAATGAGTGTGTGCCAAGTGTGTGTCCCATACCCAGCATCTGTAGTCTAACAGACTCAACAAAACCCTGCTTGAAGTGGAGGCCATGATTTGCTGTGAGCAGTAAGGGACATAAAGCCAGGAGAATATGCAGATACACAAGGCCAATAAAGCATCTTTCCACACCATGTAAAACTCAACAGCGATACCCCCATAATTCTCAAGGGTCTGGGGGAGCAGAGAGGTGGAATTTTGTTTTTAGCAACAGCTGGAAGTAACAGAGAACACTCTGCTCTAATTGGCCTCTTTGATTTTTCTCATGGAGCAAACTGAAATTTAGTCAAATATTTATCCATCCAACAAATATTTATTTCTTACCTGCCATGGGTCAGGCAGCACTGGCATAAAGAACGGAAGGACACAACCCCTCCCCTCAGGAAATGATGCATACTGCAATGAGAATGAGAGAATGGAAACCAAAATTATAAGACTGTGACTAGTTTGTTTAGAGGCAAGTGTGGGAAGCTACAGGAGCACGGAGGCAAATACCCATCCCAGACTTGAGCAAAGTGAAGGCAGGGTATCAGAGGAGGCTTCTTGGGAGAGCTGGTACTTCACCGAGTCCTCAAAAAGAAACAAAAATTGGGCAAGTGGAGTGATGACATTTCCAGCTAGAGGAATAGCATGTAGCAAGTTCAAAAACATGAGAAACTTTGTTACTGCAACGCCAGCCATACAGTCTGCTGTATGATGGAGCTGGAAAACAGGGTTCAAGGTCACGGACATCATCAGTATCTTCTACAAAGGGCAGTGAAGATCATGCTAAGGGGCTTGGGTTTCGTTCTTGACAGTGTTAAGTCCCCCAAAACTGTTAGAGCAGGCAAAGCTTTGAATTTCCATTAACTTTACAAGAGGAGATCAAAACAATTTAATCTCCCCTTGGGTGGTCCTCAGGCTTGAATTTGGCCATTCTGCTGCTGTAGGAGAATCACTGTTTCCCATGAGTGAACATTAAAAGTGGAAGCCTCATCAGTCAGCACTTGGTAATGACGATCTACATGATGGTAGAAATCTAAAGATTTAAAGTTGGCACAGCCAGAAATTCCTCCAGGCCAGCTGGTCAACTCACCGTGAGCCCAGAAATGGGATTTTGAAATTCTGATTTCCCAGGCCCACTGACATTGTTCAGAGGGTAGATGCCAGTGCACAGCTGTAAGGAAAAAGACAACAGCCTTTTCATAAAGAAAGGCCAAGAAATTCAGTGTGGAATATACAACGGAAACCCTGGGCCTCTGGGGCAGTAAGCCCACAAGTGTGTCATTTGCTGTTGAAATGCAGAGTCCGCATTTACATGAAGCCTCTTGGTCTCCATCTCGAGTGTTGCTTGCCATATTTTTATTCATAGCATTCCCTCTCTTTTCATAATTCTTTCCCACCTCCCTTTATTTTAACTACTGATTTTATTCATTGGAATTACACTATTATGTGTCAGGCATTTGTTTAGTGAAGTGTTTTGGGTAGGGCACCAATAGCCAAAAATTTTGGTGGACTATTATGACTATTATCATTTGCTGAGCAACATGACATTATATGAAAATTACTGTATCAGCTGTGCCAAGCGATGAAGCAGAATATGAGGGACATTGTATAATAGTATCTGAGGCATGTACAAAAGCTGATGCAAAGAGAAAAGATGGTTCTCATGAGAAAGAGACATTTTCTAAGGTGGATCTCCTCTTTCCAATCATCTTTACTGCAACAGCTTAATAGACAATCTGTAACCCTCCCTTTCCCAATTAGGTAATTCTCCCCACATCTCTTGCAACCTGGTATCTGAAAGTTCTTCCATGGGGAAAAAAATATATATTTTATGTCATAATTTAGAGAGAGAGCTTAAAAAGCAGTTACCTGAGAGGAAACACAGACTTAATTCACATGAAGGGGATCAATTGTCAATGTCCACTAAGTCCCTGACAAGCAGTTTTGACAACAGCAGGAGAAGAAAAAAGAAGAAAGTGGGATAAAAAAGGAGAGTTTGTGAGCCACAGAATTGATTCCCTTAACTTTGCAGTCTGACCTAGATTGGTTTTTGTCCCATGTCTCTTTACGGATGAGGGCTCTTGGCATATTTGAAAAGGTCACACTCCTGAGTCTAGTTGTGCTGAAAGTCCAAGTTCAAGGGAATGATTGCTGCTCCTGGAGCACTGCGCCCGGCTGCACAGAGGCCACGGGCTGAAAGATGGCTGACCATTTTTCCTTTCTTTCCCCAGAGGTATGGATAGATACATCCCTTTGAGCTTGGAGCCCTCTCTTCCTCACCTGGACTATGTTTGTGTGGTTAAGAACTGCTATGTGGTCTCGGACAAGGGCTCCAGGACACAGATTTGGGCTAAAGGAAGTGTCCGTAAGAATGACAGTCAAGGTCAGGTACGGCATATACTTTCTGCAAGGACAGTCAGTGTTTTAGGCTTTTCAGGCCATAGGGTCTCAGCTCCTCTGTTGCACCACTGCAGCACATAAGCAGCCATGAGCAGAACATGGATGCAGAGGCATGGCTGAGTCCCAGTGACATTTTACTTATGACATCAAAATTTGAATCTCATACATTTCATCTTCATGAAGTGTTCTTCTTTAGATTTTTGTAACCATTTGAAAAATTTTAAGTGTTGTTAGCTCACTGATTGCCAAATTGGCAGCAGGCTGGATCTGACCCTCAGATCCTAGCTAGCAGTCCCCTGTTGTAGATCAAACAGGATTTGAAGTAGTGTCAGGTTTTGCCAAACTAGAACAATCAGGAAGAACATTCCCCAGAAAGTAGAAAAGTCTGAATCAAATAGATTCTGGAGAAGAAACGTTTTCCCTTCTGAACCGATATCTTCAATCTAACAGCAGGCTAAGATTTTTGAATGAGAAGTCAGCTTTAATGGACACAGGAGGCTGATTTGAAATAAGCAGCAATATAAAGTATATATGGAGAGAAACAATGTATTCACTTATATAAGCTCAAGTCAGTTCTTACTCTGTTGTTTAGAGGATGTTTCCAGATAAAATCCTCTCTTCCCAGGTGATACAAAGACCACTTAGGCTCAGTCCTGGGAAAATTATCACCTTGAAGTGAGACATGTGAGTGTTTTGTGCTGTGCTCATTCCAGAGATGAATAAAGACAGCAAATTCAGCTTTAATTGAGCTTAATAACTGTTCTCCCAGGGCATTTCTTTCTGTCCAAAGAGGAAGAGCTCTGCAGAGACTCAGCTCTTTGTTCGGGACAGCCTTACTTGTCTCGTATTAATTTATCTCTGATCTGTCCACAGTGGTTTATGTAAACTGATTTGAGCCCCACAAACTGACAAAAATCCCAGCATAAAGAGACTGTGAAACGTGCCTTCCCAGGGAGATGGAGGAAGCACAGAAAGGAAGGGAATCTAAGAGGAGCCAATTTTCTCAAAATACAGCAGGCTGGCCAGCTCAGACTAAGGATCCCAAGAGGAGCAGCTGAAGGCTCTTCTTTATGATCTCACCCCTAGGATGAGAGACGCTTCTCAAAATGGAAACTGCAGCCTAGAGCAGTGCTAACACAGACGTGTAACACTTTCTAAATCCACAGGACGCTGGTCAATGGAAAAACATTTTCAAAACACAAACTCCAATATGCAACAAGGCAAAATAAGTATTATATTGACTTTCCTGCTAGTGTTTTGATGGCAACAGCATGGCTCAGGGGTCCGGTGAGTAAAGCATGAGACCGGGCCCCACAGCCCCTCCGCACCCAAAGCGGGTTTGCATTTCCGAGTTCCCAAATGGAAAGCGTTTTAGGCACGGTTTAACGGACGCCATCTCTGTCATTATTCAG
Seq C2 exon
ACCACACCCCTGAACTGGGAAACCTCACCGTGACCAAGGCTGGCTGGGATGGCCTCAGACTCAACTGGACCGCCGCTGACCAGGCCTACGAGCATTTTGTCATTCAGGTGCAGGAGGCCAACGGGGTGGAGGCGGCTCAGAACCTCACGGTGCCCGGGAACCTGCGGGCTGTGGACGTCCCGGGCCTGAAGGCCGCCACTCCTTACAGAGTCACCATCCACGGGGTGATCCGGGGCTATAGGACCCCAGTGCTGTCTGCTGAGGCCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575:ENSBTAT00000000752:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=NA C2=0.228
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
NA
C2:
PF0004116=fn3=WD(100=87.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]