GgaINT0124718 @ galGal4
Intron Retention
Gene
ENSGALG00000008819 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25135]
Coordinates
chr17:1539929-1541008:-
Coord C1 exon
chr17:1540964-1541008
Coord A exon
chr17:1540000-1540963
Coord C2 exon
chr17:1539929-1539999
Length
964 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TATTCTTGTTTGCTTGCTAGACT
3' ss Score
6.34
Exon sequences
Seq C1 exon
GCAAAAGCAAAGTTCAGACATTCTGAAATCCTTGGAGAATGAGAG
Seq A exon
GTGAGTAACCTTGAAATGAATTTTTCAAGAAAATGCTCAAGGAAGAGCTTTGGGACCCTCAATTCTGAGCCCCCAGTTTGAATCCACGTTAAGTCAGAGGGGTCATTCTCTTATTTGCTGACTGAAAGGTTTCCTGCTGCTTTAACTGCAGGAGCTGGTCACTTGGAAGCAAGATAGATGTGCTTGGTTTTACTCAGTCTGGCAGACCCTGTGGGCTAGTGATTGCACCTCCTTTTCATCTCAGAATGGTCCTAGCTAAGGAGATTGGGAACGAAACCCTGTATTCTACTATCAAGGACCAAGAGAAATCTGTTGGAAAGCAAAGTACTTATAAAAGTGGTGCGTTAATGTGTATGGGAGGAATACACCAAACCCAATGCTGACATTCAGTCAACACTTTGAGCAGGCTTTGCCCCTAAAACTGGTTTTCTGCAACTCTCCTCTACTTTTATGTTGCTCCCTGCTTCCATCAAGTGTTTGTACTGTGACAGAGTAAACTGACCTGGCTGAAAAATATTCTCTTTGTATGGCAGATAGTTTTTATGTCAAACCAATTCCTAGAAGGTTAAGTGGTGGTGTGTGTAATTGTGCTGTGACAAGGACAGGGAGGTGGGAGAGGAGACCAGGCTCCTGCTTTTAGTGGCAGTGCTCACTGCAGTCAGCTTTAAAGTGCTCCTCAAGCCTCAAGAGAAGGAAGCTGGCTTCCCAGACCCTTGTTAGGTCTTCTGGGATGGATTTTCCATTGTAAGAAGTAATTGTTCCCATGGTTTTGAGGAAAAATTTACTTTTTGATAGACTTCCAAGAAATTGCTGCGACTTTTGAGTCTCTGATGAGCACATGGCTTTCCTGCACAGGTTGCTTGATGAATCAGCCCAGCCTTGGGTTCTGAGCTGTGTGAGCAGGAGAGGAGTGAGATAGTGCTTCTTTGAAGGAGTGGCTGAGTTATTCTTGTTTGCTTGCTAG
Seq C2 exon
ACTAAGGATGGAACAGCTGATGGCAATCACACAGGAGGAGACAGAGCATCTACGCAGAAGGGAAGTGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819:ENSGALT00000014334:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.560
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]