GgaINT0124747 @ galGal3
Intron Retention
Gene
ENSGALG00000004689 | PKN3
Description
NA
Coordinates
chr17:5847095-5849429:+
Coord C1 exon
chr17:5847095-5847130
Coord A exon
chr17:5847131-5849146
Coord C2 exon
chr17:5849147-5849429
Length
2016 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGA
5' ss Score
1.91
3' ss Seq
CTGTTATTGCTTGATTGCAGGGC
3' ss Score
8.07
Exon sequences
Seq C1 exon
TGTAGCGACATCCCGACATCCCACCGACGTTCCTGG
Seq A exon
GTCAGAATGCAAAATGCATCAACACAAATGCAAATGTAGCTTTCTTATCCTCCTCAGTAATGCAATGTTCTATGCTCCTGGAGCAAGCTGTATCTATGTTAAGGCATCCCTGCTCTATAGAGGGGTAGTAGGACCCAGTAAAGCATACCATGCTTACATTCTAATTGTATTTAGGAAATGAGTGTGGTGCATTCTGACCAGCTTCTGGCAGAGTGACTTGAAGGAAAACTGACCTGACTGCTGCCCAGATTGTTCCTGTTCTCTGAATCGGTATCCAGGTTTCTGGACTCGGTACCCTTTGTCAGCATTAATCTTGCATCAGCTACTCATTCTATTGCTCTGGGTGGATGGAGGGGAAGAACTGCTTACCTCCATTTGCATAGTTTGGATAGAAAATAAATCTACCTGCTTTTTCTGATTTTTTTTTTTTTTAAATTAGCCTTAACCAGCAGACTAATGTTAGTCACTTTTTACACACTGGATAAAGAGCTTTTTGATTTTCCAAACTCGAGCTGGTAGAGGTTGCTTGTGAGTCAGGAACTCCATGATTCAAGTTCTTCCTCGCAAAACCCTGGATGTTTTTCAAAGCTCTGGCTTAGTTCCTGGCTTTATTAATTGGGCGAGAACTTCCTGGACTCAGGATGTTAATCTGAACCTTTTTGTTTTGCTACCAATCTGAACAATTCCTATTATGGCTATAGCGTATCCCTTGCAGACCCAACTTGGTTTTAGGCCAAATTTAAAATAGATTTGTTTTTCCTTCTAGTTCTTTCATTATTTTGCTGTCAGGCTGAAATTGTACTGCAAACTGATCGAGGATCTTGGTTTGGGTCTTTGAGATGCGTAACGAAATATACAGAGTGTGATTGGATAATTATGTGTTTCTGTGTGAGTGGCACAGGCTTTGGGTACATAGCACACTTAAAGTGCAGCAGTGTACGTTGAGTAATGCAAAACCAGTGTGGTTTATTGTTGGGAATGTGGTCAACCAATTAAAGAATATGAAAGCAAGTCAGGATTCCTGAGTTCTGTCTTTAGTGTGGTTGTGTGGTATCGAGTTGGAAGGGAGTTTGGCTGTGCAACCATTTCTTTTGCATTTAAGTGGGGAACGTGATCGTGCTACGTTGTTAAGATGTTAAATGCTCTTAATGCCATAAAGCCACCCCTTGTGCAGAAGAGAGAAGCACAGCCTCTTGTTTTGATCTGTTTCTTTAGGTATTAGGTAGCATCCTTCTGGGTAAAGTCTTAAGAGCTCCTGTTTGAATTCAGTGCTTGTTTGGTGAGTGAGATATACCTTAGATGCTGCTGCCTATACTGTGCCGGTTCAAGGTTTGTATACAGAACACCTCTGTCCAGAGGTGCTGCTGAGGCATATCTCAGCAGAACAGGGCGTATTGAAAACAATACAAAACAAAGCCCAGAGCAAGTGTGGTGTCTGCTGAATGAAACATGGAAAGTGGCCTTGCTGCCTGCAAACCACAGGTGGAGCACAAGTTGAGACAGCAGGCTGCTTCCCTTTTCAGACACAGCTGAAAGTTAAGCTTATTCTCTGCTCGTTCGTAAGCAGCTGCTGTAGGGGTTATGTTTTTCTTCTTTGGGATAACAGCTTTGAGTTGTGATGTTCTGTAACGTCTCTAACAGGTTAGTTGGTGTGTGTCTTTGGACATATAATCTGTATTTACTGTATGGTACTAGTAAAACGTGATCAGGACAAAGGCAAATATTGGCTAAGCTTTGATACTGTAGGAACAAAGATTTATGTAGCCATTAAGTAACCAAAAGAAAACTAAGATGGAGGTTTGTTTCTACTGTGATTTAAAGCCAAATTACGGCACAGTATAATCAAAGTTACATTTTGTCCTCCAGAATTTGAATCTAAGTCTTGAAAACTTCATGAAAGGATGAGCTTCAGAGTTTGTGCAAACCATTTTCTAAATGAAATGAGAGAGTGGAATCTTTATAAGGGTATTGTTTCATCCTTAAAAAGAAGGTTAAACTGTTATTGCTTGATTGCAG
Seq C2 exon
GGCAGCTGTCTCTTGCAGCTGGGCAATGGTGTGAACTTAATGGATCCAAGCTTCCAGCAAAAACTGGAGGGCGAGAAGGAACTACTTCGTCGTGCTATACAGAAAGAACTGAAAATTAAAGAGGGAGCAGAAAACCTGCGTAAAGCGACGACAGACAGAAAAAATCTTGCTCATATAGAGCATGTGCTGAAATCCTCCAACCGCAAACTAGAACAACTTCATTGGGAACTTCAGGAGCTCAATGCAAGGATTGTGATAACTGACAAAGAGGACAATAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004689:ENSGALT00000007470:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.274
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218511=HR1=WD(100=70.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]