BtaINT0112601 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010195 | PKN3
Description
Bos taurus protein kinase N3 (PKN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001205566]
Coordinates
chr11:99232119-99234691:+
Coord C1 exon
chr11:99232119-99232142
Coord A exon
chr11:99232143-99234450
Coord C2 exon
chr11:99234451-99234691
Length
2308 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
ATCCCTCTGCCTTCTGACAGCCT
3' ss Score
8.54
Exon sequences
Seq C1 exon
ATGGAGGAGGGGGCGCAGCGGCAG
Seq A exon
GTGAACGGCGCCCGGAAAGGACGGGCTGTGGGCGTGGGCCAGGGTGGGGGGGGATTCGAGGGGGTACTCGTTCACTGCCCCGGGCTCCGGCCGGGCCCCCCAGACCCCTTCCCGTGTCCCTTCCCAGTCCCCTGCCCTGGGCCCCCTACATCTCCGCAGAGCAGATCTGAGCCCTGGGGGGGATGGGGGGGTGTAAGTGGTTTCTGCCCCCCCCTGGAAATGTCCCCAAATCACCTCCCAGTGACTCAGAGCCTCCGTCGGGCCAGCCCATGAGCACATCTGAATCCGCAGTCAGGGCCACCAAGGGTGGGCCCGAGAGTTTCCTTAAAATCTATTCTACCAGGTAGGACTCTAAGGTCGATGAGCACCCGCTGGGACCGCAAAGGGGGCGGGTGCAGGCACACGGGGACCACTTCTCGGGGCGGGGGGGAAGAGAAGCATGTGATCAGCAGGCGGAGGACGCCGACCCCGCGTAGTTTGTGGGGTTCCTCCCGGAGCACACAGGCGGGGCTGGGGGACCCCCGGGGGAGGGGCATAGTCCAGCGCCCCGGGCGGGAACCTCCGGGTTCACTGAGGCTTCCAGCCCAAATGGCGAGAGGGCGGGGTTCCAGCAGTAGGTTCCCTGGGCCCTGGGACTAAGGCTGTGTGTTTCGTTATTGGGGGCCGGCGGGGTGGGGGTGGGGGAGGTGTTGAGGAGAAGTGCTAGCCCTCAGCAAAGGGGGATGGGGACGTCTGTACAACAAGATCGGGCCCCAGACGCCCAGCGGAAAAGGAGAGGTGTGTGCGCACTTGGCGGGATTCCAGCCGGGAGCCGGCAGAACCGCGGGCTCCGCTCGGCTCACGGGTGAAGTGTACTTCAGAAGACTCCTTGAGTGCCCCCACCCCTTGGGCAACTCTCAGGACTGTGTCTGCCCCCTCCTTCCCTCCCCCCTTCCTCCGGAGGTCCCTCGGCCTGTTCCCGCCGTGGCTTGTACACATTTTCCGATTTCCTGTCAATCTCCGCCCAGCAGCGGCAGCTGGGTGACTCAGGACCCCGGTGCCGGGCCCCCAGCTCCATGAGATCTTTGTTTGCTCAGGCCTTTGGCTCTGGCCCTCTGGCCTAAGGCCCTCAAAGGATTTCCTGAGGCCCGCCCCTGCCCTCTGACAGCCGGGCCAGCGGGCAAGAGGAGGCCTGGGGTGGGGGTCCTTGAGACTAGGGTGGCCACCCCTTCCACTGGGCGCGGGAGATGGAGCATGGAGAGGTAAGGAAGATCTCAGAGAGTCCTTGGGGTGGGGGTGTCATGAGTTACCCTGGGCTGAAGTCAGCTTTGGCACTGGTTGGTTTGAAACGGCCTCTGGGAAAGAGATTTTCCTCTTCTTGCTCCCACTTTGGGTGAAGTGGTGAGAGAGCCTTCCACTTCCTCCCAAGAGCTGAGCTGCATTGGGAGTGGGCCCCTGGAGACCTCCTCAGCCCCACTGGGCCTCTGCTTTGCCACCTGAGGGGTCAGACCCTCAAGGGAGCAGCCCTGGCTTCTTCTACTCAGGCCACGGTAGGGTATTCTGTCTGTCTGACCTCGGGGGGGTCCCTTCTCAGTGCCGAGCCTCTTTTTTTTTTAAGTTATTAAAAAAAATTTTGGTTGTTCTGGGTCTTTGTTGTGGCACACAGGTTTTTCTCTTGTTGCGGGCTCTTTAGTCGTGGAGTGCGGGCTTAGTTGCCCTGCGGCATACGGGATCTCAATTCTGTGACCAGGGATCAAACCTGAGTCACCTGCATTGGAAGGCGGATTCTTAACCACTGGACTACCAGGGAAGTCCCCTGGGTCTCTTTTCTGGCCGTCAGACCTTAGTGTGGATCCTAGACTTGAGAGCAGCCTGATTACGTGTGGCTGGCAGGGAAAGACTGGGGCCCAAGAGACAGTGCCTCTCCGTCTCTGTGTTTCGGCCTTGAGCAATTATGTCACCTCTCTGTGTCTCAGTTTCCTCATCTGTAAAATGGGGCTGATAACTGCACCTACCTCACAGGCTTGCTCTCAGGTTCGACAGGTTCATATCTGCACAGGTCTTAGAACAGAACACCCTATAAATGTTAACAGTTTTTTTTTTCCTCTTCCCCTTCTCTCCGATGGCAGACGACAGGAGTGTGGGCTGGATAAATAGCCTTGGGGCATCCGTCTGGCTTAGGGATACTCGCTCTGAGGTCAGAGTGGCACCCTGTGGGTCAGTCAGTCCTGGCTGCCATCCACACCTGCTTCTCTCCTCCCTCTTTCTGTGATGAGCGGAGGCTTTGGAGGTGGGGTCCCAGAGGCCTGATCCCTCTGCCTTCTGACAG
Seq C2 exon
CCTGGGGCAGGCCATCAGCCCCTGGAGGATGAGAAAGAGGTGATCCGCCGGGCCATCCAGAAGGAGCTGAAGATCAAGGAGGGTGTGGAAAACCTGCGGCGGGTGGCCACAGACCGCCGCCACCTGGGCCACGTGCAGCAGCTGCTGCGGTCGTCCAACCGCCGCCTGGAGCAGCTGCATGGGGAGCTGCGGGAGCTTCACGCCCGTATCCTGCTGCCCGGGCCTGGGCTGGGCCCGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010195:ENSBTAT00000013461:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.704
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218511=HR1=WD(100=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development