HsaINT0126158 @ hg38
Intron Retention
Gene
ENSG00000160447 | PKN3
Description
protein kinase N3 [Source:HGNC Symbol;Acc:HGNC:17999]
Coordinates
chr9:128702523-128705543:+
Coord C1 exon
chr9:128702523-128702939
Coord A exon
chr9:128702940-128705302
Coord C2 exon
chr9:128705303-128705543
Length
2363 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
GCTTTCCACCGGCTCTGCAGCCT
3' ss Score
5.06
Exon sequences
Seq C1 exon
GGCTCCCGCGGGCGCGCGGCGGGGAAGGCCAGAGGACCTGGGCGCGGGCGATGTGCCTCCTGAGCGTCCAAACCGGGGGTGAGGCGCGGTCACGCCCAGCGGGAACCGCAGGCGCCGAAGCCCGGGTACTGGGCCCAGAATCCCGCGGAATTTTGGATCCGAGGGAGGCGCTGGGGCGCGGGACCTCGGGCGTGGGGTCCCGGGCGCTGGATCGGCGCGGACGGGAGGCGGCGCTGGTCCCGCGGGCCAGCGGGTCTCGGGAGGGGGCGCCCGATCCCGCGTCTCCGGCGCCGCTTCCCGGGAAGTTTCAAGTTTGAAAGTCCTGGCGGAGGGTCTGCGGCTTCCGGGACCGGAGTGGCTGAGAGAAGGGCCCCAAGCGGCCGGAGCGGCGCCATGGAGGAGGGGGCGCCGCGGCAG
Seq A exon
GTGAACGGCGTGGGAGGGGCGCGCGGGCCCGGGGGGTGCGAGAAAGCCTCTGTCATCGCCCCGGAGCCCCGAACCGCGGCCGCTTCCCCCGATCCTCCCCTCACCCGCGCCCCTTCCCTGCCCCTGCCCTGGCCCCGGCCCCGCGACGCCCTCGCAGAGCAGACCTGATCTCCGGGTTCGGTGGTTCCTGGACCTTGCACAGTCTCCAAATCAGTCCGCGGCTGACCCGGAGACTGAACCCCAACCAGCCCGTGAGCGAGGACGGCTGAGTCCGCAGTGTGCGCCACCAGGGTGGTCCCCAGAGTGTCCTTAAGTCGGTTCTCCTCGGTGGGGCTCCAAGGCCGACGGGAATTAGCCGGGATAGAAAGGCGGGGCACAGGGGCCTGGGGGGGTTAGAATGTGCGCGCAGCGGGGGGCGCAGTCTGTGCGCGCTTGGCAGTGGCAGGAGTCCTTCCCGGAGCACAGGAGGCACGAGGGGAGCGTAGATGAGAGGGGAGCGGCCTCCCCCGCCCCAGGGCGGGAACCTTTGGGTACATAGCGGGTTCTAGAATGCGGAGGGGGCTGGGTTTCCTGCCAGAGCTGGCAGTAGGTGCGCGTGGGCCCGGAGGACCGAGGCCATGTCTATCTGCTCCTGAGGAGGGAGAGGTGGTGTCCTGTTCCGGAGCGAGTGGTTGGGAGGGGGGCATTTGCGGACAGGAGTGGGTCCCCGCAAAGAGCGGAAAGGAGGTGGTGTGTGTGTCCATGTTGGAGTTCCAACCCAGGGCAGACGGGACCATGGGGGTGTTGCGGGGTGCGTGTAGACTCCTTGAGCGCCCAAGCCAGTCGTTTAGGCCGCCTTCAGGGCTGGGGCTCGGTCTGCCCCCTCCCACCCCCTTCCTCTGGAGGTCCCTCCGCCTGTTCCAGACGTAGCTTGTACACATTTTCCGATTTCCTGCGGGGCTCCGCCCTGCAGCGGCAGCTGGGTGACTCAGGACCCCGGTGGCCGGGCCCCCAGCTCCATGGGACCTTTGTTTGCTCCGGTCTTTGGCTCTGGCCCTGTGGCCTAGGGCGGTCAGAGGATTTCCTGAGCCTCGCCCTTGCCCTCTGACAGCTGGGCCAGCAGGCCCCGCTGAGGTCTGGGGTGGGGGGGTCCCTGAGTCTGGGGTTGCGGCCCCTTCCACTGGGCTCAGGAGAAGATGGAACACAGAGAGGTAAGATGGGGTTCCTGCAACAGCCCGTGTTGCGGGGCATCATGGGTTACCCGGCCTGAGGTCACCTTTGGCACCGGTTGGTTTGAAATGCTGGCGGCTGGAAAGGAGGTGTTCCTGTTCCTGGCTCCAACCTGGGTGAAGCCGTGAGAGAGCCTTCTACTTCCTCCCGGGAGCTGAGCAGGGAGTGGGCACCCGGAGACCTCCCCAGTTCCTCTCTGTGCCTCTGCTTTGCTACCTGTGGCATTGGGACATCAGGGGAACAAGCCCTGGCTCCCAGGCCCCTGGCTGCCTTCTCATGTGGCTTCGTGTGAACCCCTATTCGGCGTAGCTTTTGTGGCTCCTGGACTCTACTTTGGGTCCCAGATGTAGAGAGAGCAGCCTGATTACCCAGGGCTGCCAGGGACAGCTGGGGCCCGAGAGATGGTGGCCCCTCCTCTGTGTCTTGACTGTGGGCAAGTTACTTCACCTCTCTGGGCCTCAGTTTCCTCACTAGAAAATAGGGGTAATAGTACAGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGATTCAAGACCAGCCTGACGAACATGGAGAAACCCCGTCCCTACTAAAAATACAAAATTAGCCGGGCTTAGTGGCGTGTGCCTGTAATCCCAGCTACTCAGGAGGCTGGGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGTGGTGAACCGAGATCGTGCCATGGCACTCCAGCCTGGGCAACAAGAGCAAAACTGTCTCAAAAAAAAAAAAAAGAAAAAGAAAAAGAAAAAAGAAAATGGGGGTAATGACCACCGCTACCGGGTGGGGTGGCTGGGAGGAGTGATGTGGTAATATATGCAAAGCACTTAGAATAGAACCTGGCACCCATTTACCGTGTGAACTGTCCCCCCCGCCACATCCTTCTCTAACGGGCGGAGGACAGGAGCCTGGCCTAGATGAGTGGCCTCGGAGTTTCCATCTGGCTCAGGCCTGAGCTCTAAGGGGAGAGAGGCTTCCAAAACCCTGTGCGAGTCAGTCCTGGGTGCCGTCCCTTCCTTCGCCTCCATCTGCAGTGAGCAAAGGCTGCTGGTGGCCGCTGCACCCCATGGCTGTTCTCCACCCTCTGCTTTCCACCGGCTCTGCAG
Seq C2 exon
CCTGGGCCGAGCCAGTGGCCCCCAGAGGATGAGAAGGAGGTGATCCGCCGGGCCATCCAGAAAGAGCTGAAGATCAAGGAGGGGGTGGAGAACCTGCGGCGCGTGGCCACAGACCGCCGCCACTTGGGCCATGTGCAGCAGCTGCTGCGGTCCTCCAACCGCCGCCTGGAGCAGCTGCATGGCGAGCTGCGGGAGCTGCACGCCCGAATCCTGCTGCCCGGCCCTGGGCCTGGCCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160447:ENST00000291906:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.753
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0218511=HR1=WD(100=82.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development