GgaINT0124768 @ galGal3
Intron Retention
Gene
ENSGALG00000008596 | FAM166A
Description
NA
Coordinates
chr17:2269726-2271347:+
Coord C1 exon
chr17:2269726-2269750
Coord A exon
chr17:2269751-2271153
Coord C2 exon
chr17:2271154-2271347
Length
1403 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGTCTCTGTTCCCTTTCCAGCTA
3' ss Score
11.93
Exon sequences
Seq C1 exon
CTCCCCACCCGCACCACATCCCTGG
Seq A exon
GTAAGTGCTGGGCTTCACCCACAAAGTCGGTTCATTTCCAACGCAAATAGCTCAGGTTGGGATAAAACAGTGAATTCTGTGATTTCTGATTGTTGTTCTTTTTAAAGGCACTCTTAAACGTGCCACATAACGAAGGGATGTGGCTCGGGGGGGGGACACGGATTGGGGGGACAGGCAGTGCCTTGCAGCAGGCTGTAATTAAAGGCAGTGCTGTAGGGCGTTGAGGGGAACTTCAGAACTGCTTTCGTCACTTCAAAACAAGGAGAGGAAATTTCTGGCGCTGCTCTCCGGGATTTGGGCTCAGAACTGAAATAATTCTTGCATCGAGGGTATCTGAAAATCTCCTTTGAGTGAATGTTTGTGTGAATGCAACGCATCGCCAGGGAGCTGCTGGGTCTGTGCTGGTGGCTGAGGGTGGGGGGATCTCAGTGGTACACAGCTGAGCCTTCTGAAGGGCTTTTGCAGTGCTCTCTGATGGCATGGAAGCTGCTGCAGCGGTGGCGATGACTCAAAGATGCTTGAAGGCATTGGGAAGTCAAACCCAACAATAGGAATTCAGGGGAGGGCTCCGTGCATGGAGAAGTGCTCCCATCCTGGGCATTGGCTCTGCCCGTCCTGTCCTGTCCTGTCCCATCCCTGCAGCCCTGGACTGGGGCCAGCGCTGCTCCATGACCAGGGATGGAGGCGGCTGCTCAGGGATGGGTTTTTAGAACAATGGCTGCAATGGTGACCTGCAGAACCGAGCGATTGCTCTGGTTTCTTAAGGAGAATGCCAGCCGCACAAAGCAGCTCAGCCTGCAGAGTGCTGATCCCTCCCCAGAGCACCGCGGCTCACATCAGCCGTGCTGTGATTCACTTTGTGGCAGATCTGTTCTCTGTAAGCCCAGACCTGAGCTCCTCAGATTGCCTTGCTTTTAATTGCTCATAAACAGAATCCTTTCTCAGCCCTGCCATTACTTTGTTCACGATCAGAGCTCCAATGCCCGGCCTGTAATTATTCGGGCTACGTCATCTGCTCAGATTTATCATCCTGCACTGCTTCCTGGTGTTGCAAGAAGTATTGGAAGCCAATGGGAAGAGGCCACCGAGCTCCTCCAGCTCCAGTGAAGGTCCTGCAGGCACTGCAGGAGAGCTGCCAGGTGTAACGCATGGCTCTGCTGTTGAAAGCAGTTGGGATGGAAGGTGCTCACTCATCGCCTTCTGATCCTTGTGCATCATCTGCCTTTATCCCCAGATAGGCATACAGTGGGATTGTTGATGGGGTGGTTGTGTCTCTGTGCTATCACAGGTCCTTCTCCAGTTCTTGGGTTTCAGGGACACCGGGAGATCCCCGGGCTCAACTTCCCCTCACTCTGCCCCATGCACAGCTCCACACGGGCTCCATGTCTCTGTTCCCTTTCCAG
Seq C2 exon
CTATGAGGGCTTCCTCCCTCAGTACAACTACCAGTTTGGAGAGACCTATGGCAAAACCACGTACCGCCTGCTGACGGACCCACACATCCGGAGGAGCCCTCGCTCTGTGCTGGCACCGCTGTGCAAGCCGAGGTTCATTGAGGACTTCAGCGGGACACAGCACGGCCTGCAGCCCTTCCTCCCTGCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008596:ENSGALT00000013998:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=NA C2=0.258
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.5=75.0)
A:
NA
C2:
PF106294=DUF2475=PD(88.9=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGCACCACATCCCT
R:
CTGGGTGTGCAGGGAGGAAG
Band lengths:
214-1617
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]