MmuINT0061076 @ mm9
Intron Retention
Gene
ENSMUSG00000026969 | Fam166a
Description
family with sequence similarity 166, member A [Source:MGI Symbol;Acc:MGI:3605773]
Coordinates
chr2:25074265-25075868:+
Coord C1 exon
chr2:25074265-25074376
Coord A exon
chr2:25074377-25075653
Coord C2 exon
chr2:25075654-25075868
Length
1277 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TCCCCTGCTTCTCCCCACAGTTA
3' ss Score
12.1
Exon sequences
Seq C1 exon
AGGGAAGGAAGGTGGACACAGAAAGGGCTGAACCAGCAAGGACAGAGTCAAAGCAAATGACAGCTACACAGAAACACAACCTCTTCACTCCAGAACCCCACTACATCCCTGG
Seq A exon
GTAAGAGCTGGGAGCTCTACAGAGAGAACGGTTGGGGCTGGGCAAGGGATGTGCAGTAGGGCTGGGGCTTCCTGGACTCCAAGAGGATGAGGACCAATGCTGAAGAGGCCCAAAGCCAGGGCTACTAAGGATGGAATAGAAATCACCAGGGATGAAGAGCTCTGGGACAGGAAAACTCTGAGGTGGAACTGTAGAGGAAGGCTAGGCCTTGCCCCTCCCTGTGGCCTCAACCTGAATGCATGTCTGTCAAGGGCAAAAACTGTGGCAGGTAAATAGCTGGCAGAAACTGGATAAGCAAATGCTAGACTTTCTTTCCATAGGAAGAAGTGGTTTAGAGATGGGATAAGTGTAAGCCAAGAAAACCCAAAAACAGACAAGACAGATGTAGCCTTACAGAGGTAGGGTGCTTGCCTAGCATACACATGCAAAATCTCCAGCACTGCAAAAGAAAAAAGAAAAAAAACAACTCCAAAGACTGTGCGTGCATACCTACACAGACTTAAGTGCAACGTTGGAGCACATAAGATAGGCGATTAACTGAAGGACCTATATACCTCCTTTTAAAATTTGTCTCTTTTGGAGCTGTCCGAGGGGTAAGGGATGGAGAGTGTTTTTTGTTTTTTTGTTAAAGATTTATTTGTTATATGTAAGTACACTGTATCAGACACACCAGAAGAGGGTGTCAGATCTCATTACTGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAGAGGAGTCAGTGCTCTTACCCTCTGAGCCATCTCGCCAGCTCGTGGATGGAGAGTGTTGAGAATGGTTGGGTGCTGAGCTGGAGAGATGGTTTAGCTATTAAAAGCATTTGCAAAAAATTTTTTTAAAAAATCATTTGCAAGTCTTCTAGATAATGTAGGTTGAATTCCTAGCATCCACATGGTAGCTTCATAACATCTATATAACTCCAGTTCCAGGGGTTCCATCCCCCTCTTCTGACTTCCACAGGCACTAGATGCACATGTGGAACACAGACATACATGCAGGCAAACCACCTAAGCACAGAAACTGAGAGAATTGCTGAGTATATGGCCCTGCTGTAGAGGACAATCTGAGAGTAGTAATGTCAGTAAAGATGTGGCATATGCTAATGGAGTCTCAGGAGGCCCAGAAATCAAGTGCTTCCATGACCTTTGCCTAAAGTGGGCAGAGGCTGGGTAACCCGCCATGTCCAATGGCTTCTAATGAAATTGCAGGAGTGGTTTCTCCCCTGCTTCTCCCCACAG
Seq C2 exon
TTATGCTGGTTTCTATCCTCAACTGCGCTACCAGGTGGGAAACACCTATGGCCGCACCACTGCACAGTTGCTCACAGATCCCAGCGTACAGAAGAGCCCCTGCTCTGTTCTGTCACCTATGACCAAGCCCAAGTTCATTGAGGACTTCAGCAAATCCAAGCCACCATGGATTCCCTGCAGGGACCTGAGAGAGCCTTACATCCCCCACTATACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026969-Fam166a:NM_026624:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.0=31.6)
A:
NA
C2:
PF106294=DUF2475=PD(89.6=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAAGGAAGGTGGACACAG
R:
GGTATAGTGGGGGATGTAAGGCT
Band lengths:
326-1603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: