HsaINT0060200 @ hg38
Intron Retention
Gene
ENSG00000188163 | FAM166A
Description
family with sequence similarity 166 member A [Source:HGNC Symbol;Acc:HGNC:33818]
Coordinates
chr9:137245639-137247770:-
Coord C1 exon
chr9:137247660-137247770
Coord A exon
chr9:137245854-137247659
Coord C2 exon
chr9:137245639-137245853
Length
1806 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
TTCTTCTCTTCCCTCCACAGCTA
3' ss Score
12.14
Exon sequences
Seq C1 exon
AAGGGAGCTGGATGCCGGGAGGGACTGGAGCCAGCAAGGCCAGAGTGAAAGCAAAATGACAACTACTCAGAAACACGATCTCTTCACGCCGGAGCCTCACTATGTCCCTGG
Seq A exon
GTGAGAGCCGGGAGCTCTGGAGGTGGCTGGGGCCAGGGCTGCAGGAGGGGGAGAATGGCTGGGGCCTGAGGCATGGAGGCCAGCTGTGAGGGGCCCAGAGCTGGACCCCAGGAAACTGAAGGCCACACCACGGGGCACTGCAGTCTGTGGGCTGGGGAGCCCTGGGACAGGGGAAGCTCAGGGATGGGGTTGCCAGGGGCCCAGGCCTCACCCTCCCTGCTGGTGTGCAGCTGCGAACTCGATACCTGGTGGCCAGCACGTCTGTCGAGCAGAAACTGGGTCAGCCAGCAGCCGGCAGAGGCCGGCTAGTAAGTGCCCGACGCCCACTCCAGAGAGGACTCCACACTTCATTTCATTTTATTTATTTATTTTTTGAGACAGAGTTTCGCTCTTATTACCCAGGCTGGAATGCAATGGTGCAATCTTGGCTTACCGCAACCTCTGCCTCCCAGGTTCAAGCGATTCTCCTGTCTCAGCTTCCGGAGTAGCTGGGATTACAGGCATCTGCCACCACACCTGGCTAATTTTGTATTTTTAGTAGGGACGAGGTTTCTTTATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGATGACAGGCTTAAGCCACCACGCCCGGCCAGGACTCCACACTTTAAAGACAAGGCAAGCAAACGCCAGGCTGCCTCACTAGATATCCCCCCAAACAAAAAATAAAAGTAACCCCTCTACGGAACGTGTGTGTGTGTGCACCTACATACACACACGCTACATGCAAAGGGGAAAGGCTGGGAAGAAACCACACCTGCCTCTGAACAGCTACGTCTGGGGAAGGGGCAGGTGAAGCTGAGGCTGGAAGTTGCTCGGCTTTTTTTTTTCTTTTGAGACGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGGGCGATCTTGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGCAGCTGGGACTACAGGGCCCGCCACCAATGCCTGGATAACTTTTTGCATTTTTAATAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTCTTGATCTCCTGACCTCGTGATCCGCCCGCCTCAGCCTCCCAAAGTGCTGGGATGACAGGCGTGAGCCACCGCGCCCGGCCCTTTGGCAGTTTTTAAGACGAAGGTAGTTCTCACTCCTTGAAAGATCACATAGACCCTGAGGCGCTGAACCGCCTGTGACCACCTGCACCATGCCCCTCGAGGTTGAATGAGGGCCCGGAAAAGCCCAGCCCTCCACCTGCCTCCCAGTTCTCTTCCCGTGCAGGAGGCTACTGGCCTCCTGGGGTGGCACAGGTGCAGGCCAAGCCCACGCAACACCCTCCTGGTGGGCCCTGCGTGTGTCCAAGGGTCCGTCCCTCGCCTATGTCCTGGCCCACACGTCTTGTGCCTGTACTTGCTTTGCCAGGGCAGAGCACCCCTGATTTGCTGGCAGTTGGAATGAGGGGTGGGAGAGGGTTGGAGGGGCTGGTACAAGGCAGGCGGCCATCTGCTGTGGTGCTGACGTGTTCCCAGCATGTGGTGTGTGCCGCCTGTTCAGGCTGAGAGAGCTCTAGAAGGCAAGTGCCACTGCAGCCCCATTTACAGGTGAGCAGAGGGCAGGCGAGCTGCCACAGGCCAACCTGCTGCTAAGTGGCCAGCAGGCTGAATCCACATCTGGCTTGAAGGGGCCCTGCCCAGTGCTGGGGCTGCCCTTGAGACCTGCCCTGCCTTCTTCTCTTCCCTCCACAG
Seq C2 exon
CTATGCCGGCTTCTTTCCGCAGCTGCGCTACCAGGTGGGGAACACCTATGGGCGTACCACGGGGCAGCTGCTCACAGACCCCAGTGTGCAGAAGAGCCCCTGCTCTGTGCTGTCCCCCATGTCCAAACCCAAGTTCATTGAGGACTTCAGCCAGTCCAAGCCCCCGAGGGTTCCCTGCCAAGACCTGACGGAGCCCTACATCCCCCACTACACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188163:ENST00000344774:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.487 A=NA C2=0.592
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.0=31.6)
A:
NA
C2:
PF106294=DUF2475=PD(89.6=82.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGGAGCTGGATGCCGG
R:
TGGTGTAGTGGGGGATGTAGG
Band lengths:
326-2132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development