GgaINT0124774 @ galGal4
Intron Retention
Gene
ENSGALG00000000853 | SLC2A8
Description
solute carrier family 2, facilitated glucose transporter member 8 [Source:RefSeq peptide;Acc:NP_989706]
Coordinates
chr17:10385180-10385597:+
Coord C1 exon
chr17:10385180-10385238
Coord A exon
chr17:10385239-10385437
Coord C2 exon
chr17:10385438-10385597
Length
199 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTCGGTATCTTCCACCTCAGAGT
3' ss Score
5.41
Exon sequences
Seq C1 exon
ATGGCGGCAGAGGAGTCCCAGTACCTGCTGGCTCACCGTACTTCGGACGCTTACCTGAG
Seq A exon
GTGAGGTGGCGGGCCTGGGGGCAGCCGCGCTGCGCTGGAGCTCGGCCGCTGCCGATTTCGGTGGCACGGGAGGGAGCGCGGAAAGTGTGACATCTGGGTCAGAACCTCCATCGGGTCCATCTGCGCGTTAACGGCCGCATCTGGGGCCGGAGCCGTGAGGTGGCAGCGGCATGATCCTTGTCGGTATCTTCCACCTCAG
Seq C2 exon
AGTGCAAAACAAGAAGCTGTACCTGGCCACGTTCGCTGCTGTCCTGGGACCACTTAGCTTTGGCTTCGTGCTAGGCTATAGCTCACCTGCTATCCCAGAGCTGAGGAAAATCGACAATCCGAAATTACGATTGGACAGCAATCAGGCATCGTGGTTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000853:ENSGALT00000001251:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008319=Sugar_tr=PU(10.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCGGCAGAGGAGTCC
R:
CCCAAACCACGATGCCTGATT
Band lengths:
219-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]