GgaINT0124853 @ galGal3
Intron Retention
Gene
ENSGALG00000021274 | F1NJE7_CHICK
Description
NA
Coordinates
chr17:1329029-1330167:-
Coord C1 exon
chr17:1330017-1330167
Coord A exon
chr17:1329189-1330016
Coord C2 exon
chr17:1329029-1329188
Length
828 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
AACCTTTGAATCCTTCTTAGGGA
3' ss Score
6.47
Exon sequences
Seq C1 exon
GGCCAGGCATATCAAGCTATGCCGATGATCCCCCAAAAGCTGGTGATTCCCTAAGAGAGTGCCTGGATGAAGCCCTGAAGGTCATTCCTGCTGCAAAGCAGAGGGATGTCTCAGCTTACTTCGGAGCGACAGCAGGCATGAGGCTACTGAG
Seq A exon
GTACTGCTGTGGGATGTGGGGCTGGTGGGGCAGTGGCACTGCATCCTGCATGGGGCTGAGCTGTCATGTGCTCCCAGCCCTCCTGCTGCCCTGAGCCAGCCCTGGGCAGGGGACGAAGCCGGCCCATGTGTGGTTGAGCTGCTCTGGGGTCAGGGAGGCTGCCCAGAGATGGCCACTGGCATCCTGGGACCCCACAGCCAAGGAGGGTCCTGTGTCTGCCCAGATGTGATGGTGGGAAGGCAGGGCAGAGGCAGGAGGCAAAGAGGTGCTGCGGGACCTGGCCTTTCCCCATCCAGTTTTAACTCTCTTCAAATGTCAGCCTTCATTTCATGGCTCTTGGTTTTATGGTTACACGTTTCTAACATTATTTCAGTGCCTTGGCAATCTGATCCCTTCTCTGTGGAGGAGCTGGGTCATACCCTGAGGGTTACGTGCTTCAGAGAGTGAGCACAGCCCACATTCCCACACACTCTGCCCCACTCAGAGGTGTGAGGCCATTCTGGCCCTGTTCTGGCAGAACCCCCCAAGCTCAGCAGCCAGTCATAGGTGGGTGGTCACCTGTGACCTTCAGCACGTTTGAGGATGACACCAAGCTGAGTGGTGCAGTCCCATGCTGGAGAGAAGGGCTGCCACCGAGAGGGAGCTGGTCAGGCTGCAGAAAAGATGGGGAGGGACTCCGTCATAGGGTGTAGTGATGGCTTTAAATAGGTAGGTTTAAACTAAATGTAAGGCACAAATTCTTCACTATGAGGGCTGTGAGGCACTGGAGGCTGCCCAGAGAAGCTGTGGATGTCTCATCCTTGGTCCCAACCTTTGAATCCTTCTTAG
Seq C2 exon
GGAACAGAACAGCTCAGCTGCAGACCGAGTCCTGGCCGAAATTGCTAAAACCATACAAGAGTATCCTGTGGCTTTCTGTGGGGCACAGATCATTACAGGAGAAGAGGAGGGAGCTTATGGTTGGATCACCATCAACTACCTGCTGGAGTCCTTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021274:ENSGALT00000014517:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=FE(11.7=100)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(12.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGGCATATCAAGCTATG
R:
CTTGGTGAAGGACTCCAGCAG
Band lengths:
311-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]