GgaINT0125096 @ galGal4
Intron Retention
Gene
ENSGALG00000001226 | ABCA2
Description
ATP-binding cassette, sub-family A (ABC1), member 2 [Source:HGNC Symbol;Acc:HGNC:32]
Coordinates
chr17:422157-422652:-
Coord C1 exon
chr17:422549-422652
Coord A exon
chr17:422250-422548
Coord C2 exon
chr17:422157-422249
Length
299 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
GGCCTGCCCTCTGTCCCCAGCAT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GATGAGCCTACTACAGGGATGGACCCCAAGGCACGGCGCTTCCTCTGGAACCTCATCCTGGATGTCATCAAAACAGGCCGCTCTGTAGTGCTCACATCCCACAG
Seq A exon
GTCTGAGGGGCTTTAGGCTACACCTGCAGTGCTTCCAGGCACCTCATGCACTGTGGACAAATGGTGGGGGGGAGAGAGGCTCTTCTGCCTCTGGGGGACAGCATATGGCAAAGGGCACAGGAGTGGAGGGAGCCTGGGTAACCCTGCTGCTGCCTCCCATCACTGGTGGTGGTGCTGGTGGCCCTGGTGCATCAGCTGAAGGCCTGGGAAGCTCAGCTCCCCATGTGCCACGGCCTGCAGCTCCTCGCTGGCTGCCTGTGCCACACATCTCCAGGCTCAGGCCTGCCCTCTGTCCCCAG
Seq C2 exon
CATGGAGGAATGCGAGGCGCTCTGTACCCGCTTGGCCATCATGGTGAACGGGCGGCTGAAATGTCTCGGCAGCATCCAGCACCTGAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001226:ENSGALT00000040507:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCCTACTACAGGGATGGA
R:
TGTTCTTCAGGTGCTGGATGC
Band lengths:
196-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]