RnoINT0010212 @ rn6
Intron Retention
Gene
ENSRNOG00000014268 | Abca2
Description
ATP binding cassette subfamily A member 2 [Source:RGD Symbol;Acc:620238]
Coordinates
chr3:2666747-2667020:+
Coord C1 exon
chr3:2666747-2666850
Coord A exon
chr3:2666851-2666927
Coord C2 exon
chr3:2666928-2667020
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CCTGTGCTGTCTGCCCACAGCAT
3' ss Score
11.21
Exon sequences
Seq C1 exon
GACGAGCCCACCACTGGCATGGACCCTAAGGCCCGGCGCTTCCTGTGGAACCTCATTCTGGACCTCATCAAGACAGGACGTTCAGTGGTGCTGACCTCACACAG
Seq A exon
GTGTGCCCCTCCCCCACCCCTCCGTGGGCCAGCCTCTGGCAGTCCCTCTGGTGCCAGCCTGTGCTGTCTGCCCACAG
Seq C2 exon
CATGGAGGAATGCGAGGCTGTGTGCACACGGCTGGCCATCATGGTGAATGGACGGCTGCGCTGCCTGGGGAGTATCCAGCACCTCAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014268:ENSRNOT00000020339:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTGGCATGGACCCTAAG
R:
TTGAGGTGCTGGATACTCCCC
Band lengths:
182-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]