BtaINT0011212 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45180820-45181172:+
Coord C1 exon
chr7:45180820-45180923
Coord A exon
chr7:45180924-45181079
Coord C2 exon
chr7:45181080-45181172
Length
156 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
ACGTCACTGGGCTCCCACAGCAT
3' ss Score
4.87
Exon sequences
Seq C1 exon
GACGAGCCGACCACTGGCATGGACCCTGGTGCCCGGCGGTTCCTCTGGAACAGTCTTCTGGCCGTGGTGCAGGAGGGCCGCTCCGTGGTTCTCACCTCACACAG
Seq A exon
GTGGGCCTGGGGAACGAGCAGTCTGGGACTGACAGGAAATGTCCAGAGCACAAGGTGGCCCAGAGCTGCAGGCTGAGGGTCCCTGGGAGGGGCAGCCCAGAGCCAAGTGCCGTGGGTCCAGGCCTGGTTGGAGCTCACGTCACTGGGCTCCCACAG
Seq C2 exon
CATGGAGGAGTGCGAGGCACTCTGCACACGCCTGGCCATCATGGTGAATGGGCGGTTCTGCTGCCTGGGCAGTGTGCAGCACCTCAAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGACCACTGGCATG
R:
CTGCCCTTGAGGTGCTGC
Band lengths:
194-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]