BtaEX0001719 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45180820-45181856:+
Coord C1 exon
chr7:45180820-45180923
Coord A exon
chr7:45181080-45181172
Coord C2 exon
chr7:45181616-45181856
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACGTCACTGGGCTCCCACAGCAT
3' ss Score
4.87
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACGAGCCGACCACTGGCATGGACCCTGGTGCCCGGCGGTTCCTCTGGAACAGTCTTCTGGCCGTGGTGCAGGAGGGCCGCTCCGTGGTTCTCACCTCACACAG
Seq A exon
CATGGAGGAGTGCGAGGCACTCTGCACACGCCTGGCCATCATGGTGAATGGGCGGTTCTGCTGCCTGGGCAGTGTGCAGCACCTCAAGGGCAG
Seq C2 exon
ATTCGGGGCTGGCCATACACTGACCCTGAGGGTGCCCTTGTCGAGATCCAAGTTGGCGGCCGACTTTGTGGCCCAGGCATTCCCGGGAGCTGAGCTGCGGGAGGCGCATGGTGGCCGCCTGCGCTTCCAGCTGCTGCCAGGAGGGCGCTGCACCTTGGCGCTAGTCTTTGGATTGCTGGCAGCACACGGCGCAGAGCATGGCGTGGAGGACTTCTCTGTGAGCCAGACCACGCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCACTGGCATGGACCCT
R:
GAATGCCTGGGCCACAAAGTC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development