RnoEX0004921 @ rn6
Exon Skipping
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12742786-12743738:-
Coord C1 exon
chr7:12743635-12743738
Coord A exon
chr7:12743404-12743496
Coord C2 exon
chr7:12742786-12743026
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCTCACACTGTCATCCGCAGCAT
3' ss Score
6.58
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACGAGCCCACCACAGGCATGGACCCAAGTGCGCGGCGATTTCTTTGGAACAACTTGCTGTCCGTGGTGCGTGAGGGCCGCTCCGTAGTGCTCACGTCGCACAG
Seq A exon
CATGGAAGAGTGTGAAGCGCTCTGCACGCGCCTGGCCATCATGGTGAACGGGCGGTTCCGCTGTCTGGGAAGCGCTCAGCATCTCAAAAGCAG
Seq C2 exon
ATTCGGGGCTGGCCACACACTGACTCTCAGGGTCCCACCGGACCAGCCGGAACCGGCGATAGCCTTCATTGTGACCACATTCCCTGATGCTGAGCTTCGGGAGGTGCATGGCAGCCGTCTGCGCTTTCAGCTGCCGCCTGGGGGCGGATGCAAGCTGGCACGAGTGTTCAGGGAGCTGGCTGCGCAAGGCAAGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTTTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-'63-72,'63-71,64-72
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.074
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGGCGATTTCTTTGGAAC
R:
GCTCAGCATCAGGGAATGTGG
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]