GgaEX6027992 @ galGal4
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2823472-2824098:-
Coord C1 exon
chr28:2823995-2824098
Coord A exon
chr28:2823812-2823904
Coord C2 exon
chr28:2823472-2823715
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCCCACCCTGGCAGCAT
3' ss Score
7.13
5' ss Seq
CCGGTAATG
5' ss Score
6.21
Exon sequences
Seq C1 exon
GATGAGCCCACGACGGGGATGGACCCACGAGCCCGACGCTTCCTGTGGGACTGCATCCTCAGCCTGGTCAGGGAGGGCCGCTCTGTGCTGCTCACATCCCACAG
Seq A exon
CATGGAGGAGTGCGAGGCGCTGTGCACCAGGATGGCCATCATGGTCAATGGCCGCTTCCGCTGCCTGGGCAGCGTGCAGCACCTCAAGAACCG
Seq C2 exon
GTTTGGGGATGGGTACACAGTGGTGGTGCGGGCGGTGGGGTCCGGCCCCGCGCTGGGCGCTGTGCAGCATCTGATGCAGTGCAGCTTCCCCGGCATCGCGCTGCAGGAGCAGCACGGCAGCACGCTGCAGTACCGCCTGCCTTCCCACGCCTGCTCCCTGGCACACGTGTTCGGCGTGCTGGCAGCGCACTGCGGGCGCGGCCCCATCCAGGACTACTCTGTGTCCCAGACCACCCTCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'52-59,'52-58,53-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGACCCACGAGCCC
R:
GGAAGCTGCACTGCATCAGAT
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]