DreEX0000043 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5704857-5710229:+
Coord C1 exon
chr11:5704857-5704960
Coord A exon
chr11:5707984-5708076
Coord C2 exon
chr11:5709986-5710229
Length
93 bp
Sequences
Splice sites
3' ss Seq
TGATTCTACTGTCTTTGCAGTAT
3' ss Score
7.42
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGAGCCAACTACTGGAATGGACCCGAAGGCAAAGCGTTTCCTCTGGAACTGCATCCTCAGTGTAGTCAAAGAAGGACGGTCTGTCGTACTCACCTCTCACAG
Seq A exon
TATGGAAGAGTGTGAGGCTCTGTGTACCCGAATGGCTATCATGGTGAATGGCAGGTTCCAGTGCCTGGGCTCAGTTCAGCACCTGAAGAACAG
Seq C2 exon
GTTTGGAGACGGTTACACAATAATCCTTCGTCTGTCCACCCCATCTGCAGAACCATGCCCAGTGGACGCCTACATCCAAAACTCTTTCCCTGGCATCCAGCTGAAGGAGAGACATCAAAATGTTCTCCAGTACCAGCTTCCATCACAAACCTGCTCACTCGCTCGTGTTTTTGAGGTTCTGTCAAATAATTATGAGGAGCTGGGGATAGCTGACTACTCTGTGTCACAGACAACACTGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-'46-47,'46-46,47-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGTTTCCTCTGGAACTGC
R:
TCTCTCCTTCAGCTGGATGCC
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]