GgaEX1005317 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54550424-54551179:-
Coord C1 exon
chrZ:54551076-54551179
Coord A exon
chrZ:54550856-54550948
Coord C2 exon
chrZ:54550424-54550667
Length
93 bp
Sequences
Splice sites
3' ss Seq
GAATTTAATTCTTTCTACAGCAT
3' ss Score
6.82
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GATGAGCCAACAACAGGGATGGACCCCAAAGCACGCCGTTTCTTGTGGAACTGTGCTCTGAGTGTTATCAAAGAGGGGAGATCAGTCGTGCTTACATCTCACAG
Seq A exon
CATGGAAGAGTGTGAAGCGCTGTGCACTCGAATGGCGATAATGGTGAATGGGCGTTTCAGGTGTCTGGGCAGCGTCCAGCACCTAAAGAACAG
Seq C2 exon
ATTTGGAGATGGTTATACCATAGTGGTGCGAATTGCAGGGGGTAACCCAGACCTGAAGCCAGTTGAGGAATTCTTTGGGCATGCCTTCCCTGGAAGTGTCCTGAAGGAGAAGCATCGTAATATGTTGCAGTACCAACTTCCGTCTTCGCAGTCTTCGCTGGCCAGAATATTCAGTGTTCTCTCCCAGAACAAAAAGAGACTCCACATAGAAGACTACTCCGTTTCTCAGACCACACTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAACAACAGGGATGGAC
R:
TCCTCAACTGGCTTCAGGTCT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]