DreEX6056950 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6204059-6208428:+
Coord C1 exon
chr14:6204059-6204162
Coord A exon
chr14:6205429-6205521
Coord C2 exon
chr14:6208185-6208428
Length
93 bp
Sequences
Splice sites
3' ss Seq
CGTGTTCTGTTCTCTCTCAGCAT
3' ss Score
9.54
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GACGAGCCCACCACTGGGATGGACCCCAAAGCACGCAGAGCCCTGTGGAACTGCATACACAGCGTCATCAAAGAGGGCCGATCTGTTGTTCTCACCTCACACAG
Seq A exon
CATGGAGGAGTGTGAAGCTCTGTGCACCAGAATGGCCATCATGGTGAACGGCAGGTTTCGCTGTCTGGGCAGCGTCCAGCACCTCAAGAACAG
Seq C2 exon
ATTTGGCGACGGGTACACCATCATTCTAAGGGTGGCAGGCCCTGATCCCGACCTGCAGCCGGTGATGAAGTTCATCGAAAGCGAACTTCCAGGGAGCACGCTGAAAGAGAAGCACAGAAACATGCTGCAATATCAGCTGCCTTCATCACTCACATCCCTCGCTCACATCTTCAGCATCCTCGCCAAAAACAAAGAGTTCCTGCGGATAGAGGATTACTCCGTCTCCCAGACCACACTAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'51-57,'51-56,52-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTGTGGAACTGCATAC
R:
TGCTTCTCTTTCAGCGTGCTC
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]