BtaEX6035707 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96274806-96276552:-
Coord C1 exon
chr8:96276449-96276552
Coord A exon
chr8:96275750-96275842
Coord C2 exon
chr8:96274806-96275049
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCATTCTGTGTCCCCACAGTAT
3' ss Score
10.53
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GATGAACCAACCACAGGCATGGACCCTAAAGCCCGGCGCTTCCTGTGGAATTGTGCCCTAAGTATCATCAAGGAAGGGAGATCAGTAGTGCTTACCTCTCACAG
Seq A exon
TATGGAAGAATGTGAAGCTCTCTGCACTAGGATGGCCATTATGGTCAACGGGCGGTTCAGGTGTCTTGGCAGTGTTCAACATCTGAAAAATAG
Seq C2 exon
GTTTGGAGATGGTTATACAATAGTTGTACGAATAGCAGGGTCGAACCCTGACCTGAAGCCTGTACAGGAGTTCTTTGAACTCGCCTTTCCAGGAAGCGTCCTGAAGGAGAAGCACCGGAACATGCTTCAGTACCAGCTTCCGTCTTCACTGTCTTCCCTGGCCAGGATTTTCAGCATCCTTTCCCAGAGCAAAAAGCGACTCCACATAGAAGACTACTCTGTCTCTCAGACAACACTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'56-60,'56-59,57-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACCAACCACAGGCATGG
R:
TACAGGCTTCAGGTCAGGGTT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]