GgaEX1005317 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53602719-53603474:-
Coord C1 exon
chrZ:53603371-53603474
Coord A exon
chrZ:53603151-53603243
Coord C2 exon
chrZ:53602719-53602962
Length
93 bp
Sequences
Splice sites
3' ss Seq
GAATTTAATTCTTTCTACAGCAT
3' ss Score
6.82
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GATGAGCCAACAACAGGGATGGACCCCAAAGCACGCCGTTTCTTGTGGAACTGTGCTCTGAGTGTTATCAAAGAGGGGAGATCAGTCGTGCTTACATCTCACAG
Seq A exon
CATGGAAGAGTGTGAAGCGCTGTGCACTCGAATGGCGATAATGGTGAATGGGCGTTTCAGGTGTCTGGGCAGCGTCCAGCACCTAAAGAACAG
Seq C2 exon
ATTTGGAGATGGTTATACCATAGTGGTGCGAATTGCAGGGGGTAACCCAGACCTGAAGCCAGTTGAGGAATTCTTTGGGCATGCCTTCCCTGGAAGTGTCCTGAAGGAGAAGCATCGTAATATGTTGCAGTACCAACTTCCGTCTTCGCAGTCTTCGCTGGCCAGAATATTCAGTGTTCTCTCCCAGAACAAAAAGAGACTCCACATAGAAGACTACTCCGTTTCTCAGACCACACTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'60-76,'60-75,61-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
PF137321=DUF4162=PU(8.3=25.0)
C2:
PF137321=DUF4162=FE(84.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCAACAACAGGGATGGAC
R:
TCCTCAACTGGCTTCAGGTCT
Band lengths:
170-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]