MmuEX6093504 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53048209-53049848:-
Coord C1 exon
chr4:53049745-53049848
Coord A exon
chr4:53049134-53049226
Coord C2 exon
chr4:53048209-53048452
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTCATTCTGTTTCCCCACAGTAT
3' ss Score
10.47
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GATGAACCAACCACAGGCATGGACCCTAAAGCCCGGAGATTCTTGTGGAATTGTGCCCTAAGCATTGTCAAGGAGGGGAGATCTGTAGTCCTTACATCTCATAG
Seq A exon
TATGGAAGAATGTGAAGCTCTTTGTACAAGGATGGCCATAATGGTCAATGGAAGGTTCAGGTGCCTTGGCAGTGTCCAACATCTGAAAAACAG
Seq C2 exon
GTTTGGAGATGGTTATACAATAGTTGTACGAATAGCAGGCTCCAACCCTGACCTGAAGCCTGTCCAGGAGTTCTTTGGACTTGCGTTTCCGGGAAGTGTCCTAAAAGAGAAACATCGAAACATGCTTCAGTACCAGCTTCCATCCTCCTTGTCATCTCTAGCCAGGATATTCAGCATCCTCTCCCAGAGCAAAAAGCGACTCCACATAGAAGACTACTCTGTCTCTCAGACAACACTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'49-52,'49-51,50-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACCAACCACAGGCATGG
R:
GACAGGCTTCAGGTCAGGGTT
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: