DreEX6033516 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51986721-51989084:+
Coord C1 exon
chr1:51986721-51986824
Coord A exon
chr1:51987115-51987207
Coord C2 exon
chr1:51988841-51989084
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACGCTTGTTTTGTTCTGCAGTAT
3' ss Score
7.57
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GACGAACCCACCACTGGGATGGACCCCAAAGCACGGCGGGCCCTGTGGAACTGCATCCTCAGCATCATTAAAGAGGGACGCTCCGTCGTGCTGACCTCACACAG
Seq A exon
TATGGAGGAATGTGAAGCTCTTTGCACTCGGATGGCCATCATGGTGAACGGCAGGTTCCGCTGTCTGGGCAGTGTGCAGCATTTAAAGAACAA
Seq C2 exon
GTTTGGTGACGGGTACACCATCATCCTGCGGGTGGCAGGCGCCGATCCGCGGCTGGAGCCGGTGATGGAGTTCATCGAGCGGGAGCTGCCGGGCAGTACGCTGAAGGAGAAACACCGAAACATGCTGCAGTACCAGCTGTCCTCATCCCTGACCTCCCTCGCTCGCATCTTCAACATCCTCTCCAAGAACAAAGAGCAGCTCCACATCGAGGACTACTCCGTCTCACAGACCACTTTAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'49-51,'49-50,50-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACTGCATCCTCAGCAT
R:
CGGTGTTTCTCCTTCAGCGTA
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]