RnoEX0004750 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69862174-69863784:-
Coord C1 exon
chr5:69863681-69863784
Coord A exon
chr5:69863057-69863149
Coord C2 exon
chr5:69862174-69862417
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCGTTCTGTCTTCCCCACAGCAT
3' ss Score
10.58
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GATGAACCAACCACAGGCATGGACCCCAAAGCCCGGAGATTCCTGTGGAATTGTGCCCTAAGCATTATCAAGGAGGGAAGATCCGTAGTTCTTACATCTCATAG
Seq A exon
CATGGAGGAATGTGAAGCTCTTTGTACCAGGATGGCCATAATGGTCAATGGGAGGTTCAGGTGCCTCGGCAGTGTCCAACATCTGAAAAACAG
Seq C2 exon
GTTTGGAGATGGTTATACCATAGTTGTACGAATAGCGGGCTCCAACCCTGACCTAAAGCCTGTCCAGGAGTTCTTTGGACTTGCCTTTCCTGGAAGTGTTCTGAAAGAGAAACATCGAAACATGCTACAGTACCAGCTTCCGTCCTCCTTGTCATCTCTGGCCAGGATATTCAGCATTCTCTCCCAGAGCAAAAAGCGACTCCACATAGAAGACTACTCTGTCTCTCAGACAACACTTGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'62-65,'62-64,63-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACCAACCACAGGCATGG
R:
TGGACAGGCTTTAGGTCAGGG
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]