MmuEX0003012 @ mm9
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79476974-79477932:+
Coord C1 exon
chr10:79476974-79477077
Coord A exon
chr10:79477213-79477305
Coord C2 exon
chr10:79477692-79477932
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCTCACACTCTCACCCACAGCAT
3' ss Score
6.82
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACGAGCCCACCACAGGCATGGACCCAAGTGCGCGGCGATTTCTTTGGAACAGCTTGCTGTCCGTGGTGCGCGAGGGCCGCTCCGTAGTGCTCACGTCGCACAG
Seq A exon
CATGGAGGAGTGCGAAGCGCTCTGCACGCGCCTGGCCATCATGGTGAACGGGCGGTTCCGCTGTCTGGGAAGCTCTCAGCATCTCAAAGGCAG
Seq C2 exon
GTTCGGGGCTGGCCACACACTGACTCTAAGGGTCCCACCGGACCAGCCTGAGCCGGCGATAGCCTTCATCAGGATCACATTCCCTGGGGCTGAACTCCGGGAGGTGCACGGCAGCCGTCTGCGCTTCCAACTGCCACCGGGGGGCAGATGCACCCTGACACGAGTGTTCAGGGAGCTGGCTGCCCAGGGCAGGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-'47-55,'47-54,49-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCGATTTCTTTGGAACAG
R:
GTTCAGCCCCAGGGAATGTG
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: