GgaEX6027992 @ galGal3
Exon Skipping
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2377371-2377997:-
Coord C1 exon
chr28:2377894-2377997
Coord A exon
chr28:2377711-2377803
Coord C2 exon
chr28:2377371-2377614
Length
93 bp
Sequences
Splice sites
3' ss Seq
TCCCCCCCCCACCCTGGCAGCAT
3' ss Score
7.13
5' ss Seq
CCGGTAATG
5' ss Score
6.21
Exon sequences
Seq C1 exon
GATGAGCCCACGACGGGGATGGACCCACGAGCCCGACGCTTCCTGTGGGACTGCATCCTCAGCCTGGTCAGGGAGGGCCGCTCTGTGCTGCTCACATCCCACAG
Seq A exon
CATGGAGGAGTGCGAGGCGCTGTGCACCAGGATGGCCATCATGGTCAATGGCCGCTTCCGCTGCCTGGGCAGCGTGCAGCACCTCAAGAACCG
Seq C2 exon
GTTTGGGGATGGGTACACAGTGGTGGTGCGGGCGGTGGGGTCCGGCCCCGCGCTGGGCGCTGTGCAGCATCTGATGCAGTGCAGCTTCCCCGGCATCGCGCTGCAGGAGCAGCACGGCAGCACGCTGCAGTACCGCCTGCCTTCCCACGCCTGCTCCCTGGCACACGTGTTCGGCGTGCTGGCAGCGCACTGCGGGCGCGGCCCCATCCAGGACTACTCTGTGTCCCAGACCACCCTCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-'35-37,'35-36,36-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGACCCACGAGCCC
R:
GGAAGCTGCACTGCATCAGAT
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]