MmuEX0003012 @ mm10
Exon Skipping
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:80014229-80015572:+
Coord C1 exon
chr10:80014229-80014332
Coord A exon
chr10:80014468-80014560
Coord C2 exon
chr10:80015306-80015572
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCTCACACTCTCACCCACAGCAT
3' ss Score
6.82
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GACGAGCCCACCACAGGCATGGACCCAAGTGCGCGGCGATTTCTTTGGAACAGCTTGCTGTCCGTGGTGCGCGAGGGCCGCTCCGTAGTGCTCACGTCGCACAG
Seq A exon
CATGGAGGAGTGCGAAGCGCTCTGCACGCGCCTGGCCATCATGGTGAACGGGCGGTTCCGCTGTCTGGGAAGCTCTCAGCATCTCAAAGGCAG
Seq C2 exon
GTGTTCCTATATTTCTCCAAAGACCAAGGGGAAGAGGAAGAGAGCAGTCGGCAGGAGGCTGAAGAAGAGGAGGTTTCCAAACCTGGCCGGCAGCATCCCAAACGTGTCAGCCGATTCCTGGAAGACCCCAGCTCTGTGGAGACCATGATCTGAGCATGCCTGCCTTGGGACTGAGTGGCAAAGCTCAGACAGAGGATCTCTGTACCATACGCTGGCTCCCAGAAAGCCTTGGGCTCTGGGGGAAATAAAAAGAAACTAGAATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.660
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAACAGCTTGCTGTCCG
R:
AGGAATCGGCTGACACGTTTG
Band lengths:
180-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types