HsaINT0000820 @ hg38
Intron Retention
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1063760-1064253:+
Coord C1 exon
chr19:1063760-1063863
Coord A exon
chr19:1063864-1064160
Coord C2 exon
chr19:1064161-1064253
Length
297 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGC
5' ss Score
5.26
3' ss Seq
GTGGTGCCGGGTCCCGACAGCAT
3' ss Score
4.6
Exon sequences
Seq C1 exon
GACGAGCCGACCACAGGCATGGACCCCAGCGCGCGGCGCTTCCTTTGGAACAGCCTTTTGGCCGTGGTGCGGGAGGGCCGTTCAGTGATGCTCACCTCCCATAG
Seq A exon
GTGGGCCGGGCTCTGATGCCCTGGGCTGTGGTTAAGGTGATCCAGGCCTGGAGAGAGAGCCCCAAAGCACAAGGCCACAGGGGATGGGGGGTCCTGGCCCTAGTGGGGCGAGGGCGCCAGGCCCCGGGGTGTAAGGACACACAGAGGTGGGACGCGGCGCCGGGATCAGAACGGTCTGGGGAAGAGTGGGGAGATGTCCACACCAGAAGGGTGGCCCAGGCCGGGGGAAGCAGGCAGTGTGGCGCCAGGCACAGGTGGCCCCGGCCTCACGGAGCTCGTGGTGCCGGGTCCCGACAG
Seq C2 exon
CATGGAGGAGTGTGAAGCGCTCTGCTCGCGCCTGGCCATCATGGTGAATGGGCGGTTCCGCTGCCTGGGCAGCCCGCAACATCTCAAGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687:ENST00000433129:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(2.8=11.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGACCACAGGCATG
R:
CCTTGAGATGTTGCGGGCTG
Band lengths:
190-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development