GgaINT0125105 @ galGal3
Intron Retention
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1300417-1301289:+
Coord C1 exon
chr17:1300417-1300524
Coord A exon
chr17:1300525-1301229
Coord C2 exon
chr17:1301230-1301289
Length
705 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTGTTTCTTTCCTCCCACAGGTG
3' ss Score
13.9
Exon sequences
Seq C1 exon
AATCATCAATTTTTAGAGCCTATGCAGGTTCCCCCTGGGGAATTTTTCAGACCACGAAAGAAGGAAGTTGAACAGCTGGATTCAAAAGATTTCCTGGGTAAACCCAAG
Seq A exon
GTAACAGGCATGTGATGATTAAGTTAAACAGCGAACGGATTAACACCCCACCTTCTGACATCTGCAGAGAGCATTATTGCTGCCCACTCCACCAATCACTGCACTGGTGGAGACCCAATGGCAGGACTCTCAGTCAAGGTACCTGGGACACACAAGCCAAAATCTGTTAGAAGTGACACCTTATCTATCAAAAATACACATTGCTGCTAAAATCCTTCCCAAACTTAGTCACTTTAAACAACCACAACTGAGCAGGTGCTTACACAAATCCCTGTGGTTATCATTTTGCTGACAACAACATTTTCAAAGGAGCACATTCCTCCTACTTGTTACTGCATTCCCAATGGGACAAACATGCACTTTGGAGAAAAATGCTTTGCCATGTACTTTAATGCAAACCAGCAGAGAATTCTTCCAATCCCTCCCATGGCCAGTGCAGTCAGCAGAAGTGCCACAGGCCAGATAACTCCTGCATGAAGAAAGGAAAGGGAAAATAACCACTCACATTTTGAAAGGCTTTGGAAAGATGGAAAATGCATGGACAAGTGGAAAATGAAGCTGCATTTTCCACTAAATGCATTGCTCTGCTTTAAGCCTGACCACTTGGGATGTCAGAAGGAAGTGGGTCTGAGTGAGAGTCTTGCAGGAAGTTTGAGCATCTCTTCATCCAGCCTAGATTAAGTTGTTGTTTCTTTCCTCCCACAG
Seq C2 exon
GTGATCTCATCCATCATTCCCAATGATGAGTACATTGGCTTTGAACCTCTCAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]